The 2.0 version of rSNPBase

Variant report

Variant rs10854079
Chromosome Location chr19:23950420-23950421
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23946600-23951400 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr19:23946600-23956800 Weak transcription Gastric stomach
3 chr19:23946600-23960200 Weak transcription Spleen Spleen
4 chr19:23946600-23964600 Weak transcription Left Ventricle heart
5 chr19:23946600-23966000 Weak transcription Brain Cingulate Gyrus brain
6 chr19:23946800-23951600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr19:23946800-23952600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr19:23946800-23953400 Weak transcription Pancreas Pancrea
9 chr19:23946800-23953600 Weak transcription Placenta Placenta
10 chr19:23946800-23954200 Weak transcription Fetal Intestine Large intestine
11 chr19:23946800-23955000 Weak transcription NHEK skin
12 chr19:23946800-23956800 Weak transcription Fetal Muscle Leg muscle
13 chr19:23946800-23956800 Weak transcription Ovary ovary
14 chr19:23946800-23957000 Weak transcription Esophagus oesophagus
15 chr19:23946800-23957400 Weak transcription Adipose Nuclei Adipose
16 chr19:23946800-23959000 Weak transcription Fetal Muscle Trunk muscle
17 chr19:23946800-23959400 Weak transcription Brain Anterior Caudate brain
18 chr19:23946800-23962200 Weak transcription Placenta Amnion Placenta Amnion
19 chr19:23946800-23963800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
20 chr19:23946800-23964400 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr19:23946800-23966000 Weak transcription Primary T cells fromperipheralblood blood
22 chr19:23946800-23973000 Weak transcription Brain Hippocampus Middle brain
23 chr19:23947000-23954800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr19:23947000-23957400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
25 chr19:23947000-23966000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr19:23947200-23951400 Weak transcription Primary T killer memory cells from peripheral blood blood
27 chr19:23947200-23956600 Weak transcription Primary hematopoietic stem cells blood
28 chr19:23947200-23959800 Weak transcription Fetal Heart heart
29 chr19:23947200-23960000 Weak transcription Fetal Lung lung
30 chr19:23947200-23960400 Weak transcription Fetal Kidney kidney
31 chr19:23947200-23978200 Weak transcription Pancreatic Islets Pancreatic Islet
32 chr19:23947400-23954600 Weak transcription Cortex derived primary cultured neurospheres brain
33 chr19:23947400-23959400 Weak transcription Colonic Mucosa Colon
34 chr19:23947400-23973000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
35 chr19:23947400-23973800 Weak transcription Rectal Smooth Muscle rectum
36 chr19:23947600-23951800 Weak transcription H1 Cell Line embryonic stem cell
37 chr19:23947600-23964800 Weak transcription Primary T helper naive cells fromperipheralblood blood
38 chr19:23947800-23951600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
39 chr19:23947800-23952800 Weak transcription Primary T cells from cord blood blood
40 chr19:23947800-23956800 Weak transcription Rectal Mucosa Donor 29 rectum
41 chr19:23947800-23959800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr19:23948000-23954800 Weak transcription Rectal Mucosa Donor 31 rectum
43 chr19:23948000-23969000 Weak transcription Primary T helper cells fromperipheralblood blood
44 chr19:23948000-23972400 Strong transcription HUES64 Cell Line embryonic stem cell
45 chr19:23948000-23976600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr19:23948200-23951600 Weak transcription H9 Cell Line embryonic stem cell
47 chr19:23948200-23952000 Weak transcription K562 blood
48 chr19:23948200-23952800 Weak transcription Fetal Adrenal Gland Adrenal Gland
49 chr19:23948200-23975600 Weak transcription Primary T helper cells PMA-I stimulated --
50 chr19:23948400-23956400 Weak transcription iPS-15b Cell Line embryonic stem cell

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Last update: Aug 31, 2015