The 2.0 version of rSNPBase

Variant report

Variant rs10854073
Chromosome Location chr19:23852074-23852075
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23832600-23865800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
2 chr19:23835200-23856600 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
3 chr19:23835200-23857200 ZNF genes & repeats Fetal Brain Female brain
4 chr19:23839200-23855200 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr19:23841400-23869200 Weak transcription Gastric stomach
6 chr19:23845000-23864000 Weak transcription Brain Substantia Nigra brain
7 chr19:23845200-23855600 Weak transcription Psoas Muscle Psoas
8 chr19:23845400-23868200 Weak transcription HSMM muscle
9 chr19:23845600-23852400 Weak transcription HepG2 liver
10 chr19:23845600-23856000 Weak transcription Stomach Mucosa stomach
11 chr19:23845600-23867600 Weak transcription Brain Cingulate Gyrus brain
12 chr19:23845600-23868200 Weak transcription Hela-S3 cervix
13 chr19:23845600-23868400 Weak transcription Fetal Kidney kidney
14 chr19:23845800-23863800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr19:23845800-23864000 Weak transcription Brain Hippocampus Middle brain
16 chr19:23845800-23869000 Weak transcription Placenta Placenta
17 chr19:23846000-23868600 Weak transcription Brain Anterior Caudate brain
18 chr19:23846400-23853800 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
19 chr19:23846400-23863800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr19:23846600-23854600 Weak transcription Placenta Amnion Placenta Amnion
21 chr19:23846600-23868400 Weak transcription Rectal Smooth Muscle rectum
22 chr19:23847400-23853400 Weak transcription Left Ventricle heart
23 chr19:23847800-23853800 Weak transcription Stomach Smooth Muscle stomach
24 chr19:23847800-23855400 Weak transcription Adipose Nuclei Adipose
25 chr19:23847800-23863800 Weak transcription K562 blood
26 chr19:23848600-23853400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
27 chr19:23848600-23869000 Weak transcription Aorta Aorta
28 chr19:23849400-23861400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
29 chr19:23849600-23854200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
30 chr19:23849600-23864000 Weak transcription HUES64 Cell Line embryonic stem cell
31 chr19:23849600-23868200 Weak transcription Muscle Satellite Cultured Cells --
32 chr19:23849800-23852400 Weak transcription Primary T cells from cord blood blood
33 chr19:23849800-23853000 Weak transcription Primary T killer memory cells from peripheral blood blood
34 chr19:23849800-23855800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr19:23849800-23863800 Weak transcription iPS-18 Cell Line embryonic stem cell
36 chr19:23849800-23868200 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr19:23849800-23868200 Weak transcription HSMMtube muscle
38 chr19:23849800-23868400 Weak transcription HMEC breast
39 chr19:23850000-23863800 Weak transcription HUES48 Cell Line embryonic stem cell
40 chr19:23850400-23852600 Strong transcription Dnd41 blood
41 chr19:23850600-23852600 ZNF genes & repeats Primary monocytes fromperipheralblood blood
42 chr19:23850800-23852400 ZNF genes & repeats Duodenum Mucosa Duodenum
43 chr19:23850800-23852600 ZNF genes & repeats Primary mononuclear cells fromperipheralblood Blood
44 chr19:23850800-23853200 Strong transcription Rectal Mucosa Donor 31 rectum
45 chr19:23850800-23853600 ZNF genes & repeats Thymus Thymus
46 chr19:23850800-23855000 ZNF genes & repeats Fetal Stomach stomach
47 chr19:23850800-23855400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr19:23850800-23856400 ZNF genes & repeats Primary hematopoietic stem cells blood
49 chr19:23850800-23856600 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
50 chr19:23850800-23857400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --

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Last update: Aug 31, 2015