The 2.0 version of rSNPBase

Variant report

Variant rs1968020
Chromosome Location chr19:23868921-23868922
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23841400-23869200 Weak transcription Gastric stomach
2 chr19:23845800-23869000 Weak transcription Placenta Placenta
3 chr19:23848600-23869000 Weak transcription Aorta Aorta
4 chr19:23852000-23869200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr19:23852200-23869200 Weak transcription Esophagus oesophagus
6 chr19:23853600-23869400 Weak transcription Spleen Spleen
7 chr19:23864400-23869200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr19:23864400-23869200 Weak transcription Colonic Mucosa Colon
9 chr19:23864400-23869200 Weak transcription Lung lung
10 chr19:23864600-23869000 Weak transcription Fetal Muscle Trunk muscle
11 chr19:23864600-23869200 Weak transcription Pancreas Pancrea
12 chr19:23865600-23869200 Weak transcription Primary neutrophils fromperipheralblood blood
13 chr19:23867400-23869000 Enhancers Primary B cells from peripheral blood blood
14 chr19:23867600-23869200 Enhancers Primary T helper naive cells from peripheral blood blood
15 chr19:23868000-23869000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr19:23868000-23870200 Active TSS Rectal Mucosa Donor 29 rectum
17 chr19:23868200-23869000 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr19:23868200-23869000 Flanking Active TSS Fetal Adrenal Gland Adrenal Gland
19 chr19:23868200-23869200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr19:23868200-23869200 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
21 chr19:23868200-23869200 Enhancers Colon Smooth Muscle Colon
22 chr19:23868200-23870000 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
23 chr19:23868200-23870200 Active TSS H1 Cell Line embryonic stem cell
24 chr19:23868200-23870200 Active TSS HUES6 Cell Line embryonic stem cell
25 chr19:23868200-23870200 Active TSS iPS-20b Cell Line embryonic stem cell
26 chr19:23868400-23869000 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr19:23868400-23869000 Flanking Active TSS Primary T cells from cord blood blood
28 chr19:23868400-23869000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
29 chr19:23868400-23869000 Flanking Active TSS Hela-S3 cervix
30 chr19:23868400-23869200 Flanking Active TSS Primary hematopoietic stem cells blood
31 chr19:23868400-23869600 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr19:23868400-23870000 Active TSS ES-I3 Cell Line embryonic stem cell
33 chr19:23868400-23870000 Active TSS GM12878-XiMat blood
34 chr19:23868400-23870200 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr19:23868400-23870200 Active TSS HUES48 Cell Line embryonic stem cell
36 chr19:23868400-23870200 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr19:23868400-23870200 Active TSS Primary hematopoietic stem cells short term culture blood
38 chr19:23868400-23870200 Active TSS Rectal Smooth Muscle rectum
39 chr19:23868400-23870200 Active TSS HMEC breast
40 chr19:23868400-23870200 Active TSS HSMMtube muscle
41 chr19:23868400-23870200 Active TSS K562 blood
42 chr19:23868400-23870200 Active TSS Monocytes-CD14+_RO01746 blood
43 chr19:23868400-23870400 Active TSS Fetal Brain Female brain
44 chr19:23868600-23869000 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
45 chr19:23868600-23869000 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr19:23868600-23869000 Flanking Active TSS Brain Cingulate Gyrus brain
47 chr19:23868600-23869000 Flanking Active TSS Brain Germinal Matrix brain
48 chr19:23868600-23869000 Flanking Active TSS Duodenum Mucosa Duodenum
49 chr19:23868600-23869000 Enhancers Small Intestine intestine
50 chr19:23868600-23869000 Flanking Active TSS HepG2 liver

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Last update: Aug 31, 2015