The 2.0 version of rSNPBase

Variant report

Variant rs62118786
Chromosome Location chr19:23985598-23985599
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:34 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23965600-24000400 Weak transcription Pancreas Pancrea
2 chr19:23972400-23990000 Weak transcription HUES64 Cell Line embryonic stem cell
3 chr19:23972600-23989800 Weak transcription iPS-20b Cell Line embryonic stem cell
4 chr19:23972800-23998800 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr19:23973800-23990200 Weak transcription HUES48 Cell Line embryonic stem cell
6 chr19:23973800-23993400 Weak transcription Aorta Aorta
7 chr19:23973800-24000400 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr19:23973800-24001200 Weak transcription H9 Cell Line embryonic stem cell
9 chr19:23974200-23987400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr19:23977000-23998000 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr19:23980000-24000600 Weak transcription K562 blood
12 chr19:23980200-23994800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr19:23980400-23985600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr19:23982000-23985600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr19:23982000-23997000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr19:23982200-24004400 Weak transcription iPS-15b Cell Line embryonic stem cell
17 chr19:23982800-23987400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr19:23982800-23993000 Weak transcription Dnd41 blood
19 chr19:23984200-23987400 Weak transcription HUES6 Cell Line embryonic stem cell
20 chr19:23984200-23991600 Weak transcription Breast Myoepithelial Primary Cells Breast
21 chr19:23984200-24001800 Weak transcription Ovary ovary
22 chr19:23984400-23985600 Flanking Active TSS Primary T cells from cord blood blood
23 chr19:23984800-23985600 Enhancers Fetal Adrenal Gland Adrenal Gland
24 chr19:23985400-23985600 Enhancers Primary T helper naive cells from peripheral blood blood
25 chr19:23985400-23985800 Enhancers Primary T killer naive cells fromperipheralblood blood
26 chr19:23985400-23986200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
27 chr19:23985400-23986200 Enhancers Primary T helper 17 cells PMA-I stimulated --
28 chr19:23985400-23986600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr19:23985400-23987000 Weak transcription Primary hematopoietic stem cells short term culture blood
30 chr19:23985400-23987000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
31 chr19:23985400-23987000 Enhancers Primary T helper cells fromperipheralblood blood
32 chr19:23985400-23987200 Enhancers Primary T helper cells PMA-I stimulated --
33 chr19:23985400-23987800 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
34 chr19:23985400-23993400 Weak transcription Placenta Amnion Placenta Amnion

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Last update: Aug 31, 2015