The 2.0 version of rSNPBase

Variant report

Variant rs7258759
Chromosome Location chr19:23947436-23947437
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23945200-23947800 Active TSS Rectal Mucosa Donor 29 rectum
2 chr19:23945400-23947600 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
3 chr19:23945400-23947600 Active TSS HUES48 Cell Line embryonic stem cell
4 chr19:23945400-23947800 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr19:23945400-23947800 Active TSS K562 blood
6 chr19:23945400-23948000 Active TSS HUES64 Cell Line embryonic stem cell
7 chr19:23945400-23948200 Active TSS H9 Cell Line embryonic stem cell
8 chr19:23945400-23948400 Active TSS ES-I3 Cell Line embryonic stem cell
9 chr19:23945400-23949200 Active TSS HUES6 Cell Line embryonic stem cell
10 chr19:23945600-23947800 Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr19:23945600-23947800 Active TSS ES-UCSF4 Cell Line embryonic stem cell
12 chr19:23945800-23948200 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
13 chr19:23946200-23949600 Weak transcription HSMMtube muscle
14 chr19:23946400-23947600 Active TSS H1 Cell Line embryonic stem cell
15 chr19:23946600-23951400 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr19:23946600-23956800 Weak transcription Gastric stomach
17 chr19:23946600-23960200 Weak transcription Spleen Spleen
18 chr19:23946600-23964600 Weak transcription Left Ventricle heart
19 chr19:23946600-23966000 Weak transcription Brain Cingulate Gyrus brain
20 chr19:23946800-23947600 Enhancers Primary T helper naive cells fromperipheralblood blood
21 chr19:23946800-23949600 Weak transcription Fetal Stomach stomach
22 chr19:23946800-23949600 Weak transcription Lung lung
23 chr19:23946800-23949800 Weak transcription Fetal Intestine Small intestine
24 chr19:23946800-23951600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr19:23946800-23952600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr19:23946800-23953400 Weak transcription Pancreas Pancrea
27 chr19:23946800-23953600 Weak transcription Placenta Placenta
28 chr19:23946800-23954200 Weak transcription Fetal Intestine Large intestine
29 chr19:23946800-23955000 Weak transcription NHEK skin
30 chr19:23946800-23956800 Weak transcription Fetal Muscle Leg muscle
31 chr19:23946800-23956800 Weak transcription Ovary ovary
32 chr19:23946800-23957000 Weak transcription Esophagus oesophagus
33 chr19:23946800-23957400 Weak transcription Adipose Nuclei Adipose
34 chr19:23946800-23959000 Weak transcription Fetal Muscle Trunk muscle
35 chr19:23946800-23959400 Weak transcription Brain Anterior Caudate brain
36 chr19:23946800-23962200 Weak transcription Placenta Amnion Placenta Amnion
37 chr19:23946800-23963800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
38 chr19:23946800-23964400 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr19:23946800-23966000 Weak transcription Primary T cells fromperipheralblood blood
40 chr19:23946800-23973000 Weak transcription Brain Hippocampus Middle brain
41 chr19:23947000-23947800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
42 chr19:23947000-23948000 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
43 chr19:23947000-23948200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
44 chr19:23947000-23948200 Enhancers Primary T helper cells PMA-I stimulated --
45 chr19:23947000-23954800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr19:23947000-23957400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
47 chr19:23947000-23966000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr19:23947200-23947600 Active TSS Rectal Mucosa Donor 31 rectum
49 chr19:23947200-23947800 Enhancers Primary T cells from cord blood blood
50 chr19:23947200-23949600 Weak transcription Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015