The 2.0 version of rSNPBase

Variant report

Variant rs6511546
Chromosome Location chr19:23965066-23965067
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23946600-23966000 Weak transcription Brain Cingulate Gyrus brain
2 chr19:23946800-23966000 Weak transcription Primary T cells fromperipheralblood blood
3 chr19:23946800-23973000 Weak transcription Brain Hippocampus Middle brain
4 chr19:23947000-23966000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr19:23947200-23978200 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr19:23947400-23973000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
7 chr19:23947400-23973800 Weak transcription Rectal Smooth Muscle rectum
8 chr19:23948000-23969000 Weak transcription Primary T helper cells fromperipheralblood blood
9 chr19:23948000-23972400 Strong transcription HUES64 Cell Line embryonic stem cell
10 chr19:23948000-23976600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
11 chr19:23948200-23975600 Weak transcription Primary T helper cells PMA-I stimulated --
12 chr19:23949600-23972600 Strong transcription iPS-20b Cell Line embryonic stem cell
13 chr19:23949800-23975000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr19:23951400-23968000 Weak transcription Fetal Thymus thymus
15 chr19:23951400-23973800 Strong transcription HUES48 Cell Line embryonic stem cell
16 chr19:23951800-23966200 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
17 chr19:23952000-23974200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr19:23953800-23971600 Strong transcription K562 blood
19 chr19:23955200-23969800 Weak transcription Right Ventricle heart
20 chr19:23956400-23968000 Strong transcription iPS-15b Cell Line embryonic stem cell
21 chr19:23956600-23968400 Weak transcription Brain Inferior Temporal Lobe brain
22 chr19:23956600-23971600 Strong transcription H9 Cell Line embryonic stem cell
23 chr19:23956800-23965400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr19:23956800-23973800 Strong transcription Rectal Mucosa Donor 29 rectum
25 chr19:23958200-23969600 Strong transcription Fetal Adrenal Gland Adrenal Gland
26 chr19:23958600-23968000 Strong transcription Breast Myoepithelial Primary Cells Breast
27 chr19:23958600-23973800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr19:23959600-23975000 Strong transcription HUES6 Cell Line embryonic stem cell
29 chr19:23959800-23971600 Weak transcription Brain Anterior Caudate brain
30 chr19:23960200-23966600 Weak transcription Fetal Heart heart
31 chr19:23960400-23965800 Strong transcription Fetal Kidney kidney
32 chr19:23960400-23968000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
33 chr19:23960600-23973200 Weak transcription Spleen Spleen
34 chr19:23960800-23975800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
35 chr19:23961000-23973400 Weak transcription Aorta Aorta
36 chr19:23961800-23965200 Weak transcription Placenta Placenta
37 chr19:23962200-23972800 Strong transcription ES-I3 Cell Line embryonic stem cell
38 chr19:23962800-23969800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr19:23963000-23966000 Weak transcription Fetal Muscle Leg muscle
40 chr19:23963000-23972800 Weak transcription Fetal Muscle Trunk muscle
41 chr19:23963000-23973200 Weak transcription Colonic Mucosa Colon
42 chr19:23963400-23978200 Weak transcription Fetal Lung lung
43 chr19:23963600-23966200 ZNF genes & repeats Duodenum Mucosa Duodenum
44 chr19:23963600-23970800 Weak transcription Placenta Amnion Placenta Amnion
45 chr19:23963800-23974800 Weak transcription Primary B cells from cord blood blood
46 chr19:23964000-23966600 Weak transcription Ovary ovary
47 chr19:23964000-23971000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
48 chr19:23964200-23965400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
49 chr19:23964200-23965800 Strong transcription Fetal Intestine Large intestine
50 chr19:23964200-23967200 Strong transcription Fetal Stomach stomach

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Last update: Aug 31, 2015