The 2.0 version of rSNPBase

Variant report

Variant rs12642900
Chromosome Location chr4:107010329-107010330
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:106985000-107011400 Weak transcription HepG2 liver
2 chr4:106993400-107010400 Weak transcription Skeletal Muscle Male skeletal muscle
3 chr4:106993800-107010800 Weak transcription Placenta Amnion Placenta Amnion
4 chr4:106994600-107015000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
5 chr4:106994800-107011600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr4:106995200-107011400 Weak transcription Colonic Mucosa Colon
7 chr4:106995400-107011000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
8 chr4:106995400-107011000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr4:106995600-107010400 Weak transcription Primary T regulatory cells fromperipheralblood blood
10 chr4:106996000-107010800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr4:106997200-107031000 Weak transcription Psoas Muscle Psoas
12 chr4:106998600-107010600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr4:106998600-107010800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr4:106999000-107011000 Weak transcription Brain Cingulate Gyrus brain
15 chr4:106999000-107011800 Weak transcription Fetal Heart heart
16 chr4:106999000-107012000 Weak transcription NHDF-Ad bronchial
17 chr4:106999200-107010400 Weak transcription HSMM muscle
18 chr4:107000000-107011400 Weak transcription Primary T helper cells PMA-I stimulated --
19 chr4:107001200-107018600 Weak transcription HUVEC blood vessel
20 chr4:107002800-107011400 Weak transcription Primary T helper naive cells from peripheral blood blood
21 chr4:107003000-107010400 Weak transcription Brain Substantia Nigra brain
22 chr4:107003600-107010800 Weak transcription Colon Smooth Muscle Colon
23 chr4:107003800-107010600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
24 chr4:107004200-107011000 Weak transcription Primary T killer naive cells fromperipheralblood blood
25 chr4:107004600-107010400 Weak transcription Stomach Smooth Muscle stomach
26 chr4:107004600-107010800 Weak transcription Gastric stomach
27 chr4:107004600-107011400 Weak transcription Primary T helper naive cells fromperipheralblood blood
28 chr4:107005000-107010800 Weak transcription Fetal Thymus thymus
29 chr4:107005000-107011000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr4:107005200-107011400 Weak transcription Thymus Thymus
31 chr4:107005800-107011000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
32 chr4:107008200-107011000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr4:107008200-107011200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
34 chr4:107008600-107010600 Strong transcription Primary B cells from cord blood blood
35 chr4:107008800-107010800 Strong transcription Ovary ovary
36 chr4:107008800-107011200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr4:107008800-107013000 ZNF genes & repeats Adipose Nuclei Adipose
38 chr4:107008800-107013600 Weak transcription NHLF lung
39 chr4:107009000-107010800 Weak transcription Spleen Spleen
40 chr4:107009000-107012200 Weak transcription Muscle Satellite Cultured Cells --
41 chr4:107009000-107012800 ZNF genes & repeats Primary hematopoietic stem cells blood
42 chr4:107009400-107011000 Strong transcription Primary T cells from cord blood blood
43 chr4:107009400-107012600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr4:107009600-107010600 Weak transcription Brain Hippocampus Middle brain
45 chr4:107009600-107011200 Strong transcription Fetal Lung lung
46 chr4:107009600-107012000 Strong transcription Fetal Adrenal Gland Adrenal Gland
47 chr4:107009600-107012600 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
48 chr4:107009600-107012800 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
49 chr4:107009600-107014800 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
50 chr4:107009800-107010600 Strong transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015