Variant report

Variant	rs4458525
Chromosome Location	chr4:107039890-107039891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:107037209..107040065-chr4:107046985..107049286,2	K562	blood:
2	chr4:106817148..106819269-chr4:107039233..107040831,3	MCF-7	breast:
3	chr4:107023929..107026888-chr4:107039825..107042203,2	K562	blood:

Variant related genes	Relation type
ENSG00000168743	Chromatin interaction

Extended variants
information (count: 242 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:235)

rs_ID	r²[population]
rs10002288	0.99[ASN][1000 genomes]
rs10016884	0.95[CEU][hapmap]
rs10025052	0.99[ASN][1000 genomes]
rs10030019	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10084928	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10433894	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10516532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10516534	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097912	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11097914	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097916	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097924	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097927	0.95[ASN][1000 genomes]
rs11097928	0.95[ASN][1000 genomes]
rs11097929	0.95[ASN][1000 genomes]
rs11930970	0.95[ASN][1000 genomes]
rs11940160	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11942153	0.99[ASN][1000 genomes]
rs11947335	0.95[ASN][1000 genomes]
rs12499891	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12500295	0.95[ASN][1000 genomes]
rs12500331	0.80[ASN][1000 genomes]
rs12500775	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12501801	0.95[ASN][1000 genomes]
rs12502764	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12503753	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12504704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12504721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12505689	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12506062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12506658	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12507867	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12507874	0.90[ASN][1000 genomes]
rs12508432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12508552	1.00[ASN][1000 genomes]
rs12509366	1.00[ASN][1000 genomes]
rs12509640	1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs12509865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12510058	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12510966	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12511305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12512683	1.00[ASN][1000 genomes]
rs12512877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12512903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12512966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12513317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12639678	0.96[ASN][1000 genomes]
rs12639869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12641015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12641037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12642059	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12642227	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642454	0.95[ASN][1000 genomes]
rs12642900	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12643397	1.00[ASN][1000 genomes]
rs12644259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12644596	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12645255	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12645271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12645490	0.95[ASN][1000 genomes]
rs12645698	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12645743	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12646263	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12646485	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12647078	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12649709	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12651360	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13534	0.95[ASN][1000 genomes]
rs17036613	0.92[CHB][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17259572	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17273093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17273445	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17274017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17274248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17275217	0.95[ASN][1000 genomes]
rs17333287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17333732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17333879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17333899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1988695	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2290607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28391259	1.00[ASN][1000 genomes]
rs28507027	1.00[ASN][1000 genomes]
rs28765420	0.98[ASN][1000 genomes]
rs28787305	1.00[ASN][1000 genomes]
rs28814088	0.94[ASN][1000 genomes]
rs28822186	1.00[ASN][1000 genomes]
rs28866820	1.00[ASN][1000 genomes]
rs28868894	1.00[ASN][1000 genomes]
rs28875879	1.00[ASN][1000 genomes]
rs28897193	1.00[ASN][1000 genomes]
rs34193646	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34899289	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34961213	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35518913	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737497	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3737498	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3762945	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3762946	0.93[ASN][1000 genomes]
rs3762947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3775090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3792718	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805405	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805407	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805409	0.95[ASN][1000 genomes]
rs3805410	0.94[ASN][1000 genomes]
rs3805411	0.95[ASN][1000 genomes]
rs4323181	1.00[ASN][1000 genomes]
rs4337798	1.00[ASN][1000 genomes]
rs4337799	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4339284	1.00[ASN][1000 genomes]
rs4422480	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4429790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4466113	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4481295	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4521418	0.99[ASN][1000 genomes]
rs4607300	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4645291	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55633564	1.00[ASN][1000 genomes]
rs55634475	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55710349	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55726133	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55753411	0.95[ASN][1000 genomes]
rs55833794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56009469	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56135499	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56222430	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56231393	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56260521	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56329826	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56333662	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56341229	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56775039	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56833325	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57246774	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59228887	0.95[ASN][1000 genomes]
rs59784613	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60538413	0.89[ASN][1000 genomes]
rs61256759	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61544154	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62321365	0.98[ASN][1000 genomes]
rs6533240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6533245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6533246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6810877	0.98[ASN][1000 genomes]
rs6814166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6815014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816614	1.00[ASN][1000 genomes]
rs6816698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6818197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6818626	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6819224	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6819742	0.95[ASN][1000 genomes]
rs6822692	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823347	0.99[ASN][1000 genomes]
rs6824682	1.00[ASN][1000 genomes]
rs6827816	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6828362	1.00[ASN][1000 genomes]
rs6828660	0.95[ASN][1000 genomes]
rs6829795	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6831032	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6831665	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6835216	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs6838283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6842919	0.97[ASN][1000 genomes]
rs6843331	0.97[ASN][1000 genomes]
rs6843870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844324	1.00[ASN][1000 genomes]
rs6846579	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6849341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6856408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6858391	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72489522	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72677306	1.00[ASN][1000 genomes]
rs72876575	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72876590	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72876592	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72876594	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72878537	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72893620	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7340989	0.93[ASN][1000 genomes]
rs73839422	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73839455	0.95[ASN][1000 genomes]
rs73839456	0.95[ASN][1000 genomes]
rs7654865	0.95[ASN][1000 genomes]
rs7655054	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7657962	0.92[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs7657975	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7658011	0.99[ASN][1000 genomes]
rs7658701	1.00[ASN][1000 genomes]
rs7661499	0.93[ASN][1000 genomes]
rs7661565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7662291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7662395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7662592	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7662806	1.00[ASN][1000 genomes]
rs7662836	1.00[ASN][1000 genomes]
rs7664032	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664188	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7665946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7667719	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7668477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7669087	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7669212	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7671145	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7673949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7674381	0.89[ASN][1000 genomes]
rs7674460	0.95[ASN][1000 genomes]
rs7674466	0.94[ASN][1000 genomes]
rs7674796	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7674931	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7675728	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7677248	0.99[ASN][1000 genomes]
rs7678229	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7678749	0.95[ASN][1000 genomes]
rs7678847	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7678943	0.95[ASN][1000 genomes]
rs7681257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7688411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7692069	0.95[ASN][1000 genomes]
rs7697996	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7698386	0.99[ASN][1000 genomes]
rs7699768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9684658	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9685018	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9685464	1.00[ASN][1000 genomes]
rs9991091	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799793	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1801716	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1849248	chr4:107000462-107062671	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1850577	chr4:107000462-107062671	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv511247	chr4:107022702-107065220	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv4450	chr4:107037823-107082669	Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4458525	SCYE1	Cis_1M	lymphoblastoid	RTeQTL
rs4458525	MGC16169	cis	multi-tissue	Pritchard
rs4458525	MGC16169	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107031600-107052600	Weak transcription	Fetal Thymus	thymus
2	chr4:107031800-107053400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:107032000-107052200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:107032000-107058200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:107033400-107053000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:107033600-107052800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:107033600-107053400	Weak transcription	Osteobl	bone
8	chr4:107033800-107053400	Weak transcription	HSMM	muscle
9	chr4:107034200-107040200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr4:107034200-107053400	Weak transcription	Right Ventricle	heart
11	chr4:107034800-107041000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:107035200-107057200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr4:107035400-107040400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr4:107035600-107083200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:107035800-107040200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:107035800-107041000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr4:107035800-107041600	Weak transcription	Colonic Mucosa	Colon
18	chr4:107035800-107043800	Weak transcription	Thymus	Thymus
19	chr4:107035800-107052200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr4:107035800-107053000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr4:107035800-107053000	Weak transcription	Fetal Lung	lung
22	chr4:107035800-107053200	Weak transcription	Fetal Stomach	stomach
23	chr4:107035800-107053200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr4:107035800-107053400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr4:107035800-107053400	Weak transcription	Lung	lung
26	chr4:107035800-107053400	Weak transcription	Pancreas	Pancrea
27	chr4:107035800-107053600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr4:107035800-107053600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr4:107036000-107053200	Weak transcription	Brain Anterior Caudate	brain
30	chr4:107036200-107040600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr4:107036200-107052800	Weak transcription	Fetal Muscle Leg	muscle
32	chr4:107037200-107053000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:107037400-107053400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr4:107037400-107053400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr4:107037600-107047000	Weak transcription	GM12878-XiMat	blood
36	chr4:107037600-107053400	Weak transcription	Brain Hippocampus Middle	brain
37	chr4:107037600-107056200	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr4:107037600-107060600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr4:107037600-107061600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:107037600-107066400	Weak transcription	Fetal Kidney	kidney
41	chr4:107037800-107040200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr4:107037800-107041000	Weak transcription	Fetal Intestine Large	intestine
43	chr4:107037800-107041400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr4:107037800-107053000	Weak transcription	Primary B cells from peripheral blood	blood
45	chr4:107037800-107053000	Weak transcription	Liver	Liver
46	chr4:107037800-107053400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr4:107037800-107053400	Weak transcription	Adipose Nuclei	Adipose
48	chr4:107037800-107053400	Weak transcription	HepG2	liver
49	chr4:107037800-107077400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr4:107038000-107040800	Weak transcription	Primary hematopoietic stem cells	blood

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