Variant report

Variant	rs56333662
Chromosome Location	chr4:107177196-107177197
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:107176873-107177281	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
TBCK	TF binding region

Extended variants
information (count: 236 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:235)

rs_ID	r²[population]
rs10002288	0.94[ASN][1000 genomes]
rs10025052	0.94[ASN][1000 genomes]
rs10030019	0.95[ASN][1000 genomes]
rs10084928	0.95[ASN][1000 genomes]
rs10433894	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10516532	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10516533	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516534	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097912	0.95[ASN][1000 genomes]
rs11097914	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097916	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097917	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097919	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097924	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097927	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097928	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097929	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11930970	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11940160	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11942153	0.94[ASN][1000 genomes]
rs11947335	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12499891	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12500295	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12500775	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12501801	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12502764	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12503753	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12504704	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12504721	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505689	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12506062	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12506658	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12507429	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12507867	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12507874	0.88[ASN][1000 genomes]
rs12508432	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12508552	0.95[ASN][1000 genomes]
rs12509366	0.95[ASN][1000 genomes]
rs12509640	0.86[ASN][1000 genomes]
rs12509865	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12510058	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12510966	0.95[ASN][1000 genomes]
rs12511305	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12512683	0.95[ASN][1000 genomes]
rs12512877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12512903	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12512966	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12513317	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12639678	0.91[ASN][1000 genomes]
rs12639869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12641015	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12641037	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12642059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642227	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12642454	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12642900	0.95[ASN][1000 genomes]
rs12643397	0.95[ASN][1000 genomes]
rs12644259	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12644596	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12645255	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12645271	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645490	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645698	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12645743	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12646263	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12646485	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12647078	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12648091	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12649709	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12651360	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13534	0.95[ASN][1000 genomes]
rs17036613	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17259572	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17273093	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17273445	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17274017	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17274248	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17275217	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17333287	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17333732	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17333879	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17333899	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1988695	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2290607	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28391259	0.95[ASN][1000 genomes]
rs28507027	0.95[ASN][1000 genomes]
rs28765420	0.93[ASN][1000 genomes]
rs28787305	0.95[ASN][1000 genomes]
rs28814088	0.89[ASN][1000 genomes]
rs28822186	0.95[ASN][1000 genomes]
rs28866820	0.95[ASN][1000 genomes]
rs28868894	0.95[ASN][1000 genomes]
rs28875879	0.95[ASN][1000 genomes]
rs28897193	0.95[ASN][1000 genomes]
rs34193646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34899289	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34961213	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35518913	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3737497	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3737498	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3762945	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3762946	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3762947	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3775090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792718	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805405	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805407	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805409	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805410	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3805411	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4323181	0.95[ASN][1000 genomes]
rs4337798	0.95[ASN][1000 genomes]
rs4337799	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4339284	0.95[ASN][1000 genomes]
rs4422480	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4429790	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4458525	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4466113	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4481295	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4521418	0.94[ASN][1000 genomes]
rs4607300	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4645291	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55633564	0.95[ASN][1000 genomes]
rs55634475	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55710349	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55726133	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55753411	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55833794	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56009469	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56135499	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56222430	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56231393	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56260521	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56329826	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56341229	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56775039	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56833325	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57246774	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59228887	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59784613	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60538413	0.84[ASN][1000 genomes]
rs61256759	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61544154	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321365	0.93[ASN][1000 genomes]
rs6533240	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6533243	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533245	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533246	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6810877	0.93[ASN][1000 genomes]
rs6814166	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6815014	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6816614	0.95[ASN][1000 genomes]
rs6816698	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6818197	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6818626	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6819224	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6819742	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6822692	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6823347	0.94[ASN][1000 genomes]
rs6824682	0.95[ASN][1000 genomes]
rs6827816	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6828362	0.95[ASN][1000 genomes]
rs6828660	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6829795	0.95[ASN][1000 genomes]
rs6831032	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6831665	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6835216	0.95[ASN][1000 genomes]
rs6838283	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6842919	0.93[ASN][1000 genomes]
rs6843331	0.93[ASN][1000 genomes]
rs6843870	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6844324	0.95[ASN][1000 genomes]
rs6846579	0.95[ASN][1000 genomes]
rs6849341	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6856408	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6858391	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72489522	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72677306	0.95[ASN][1000 genomes]
rs72876575	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72876590	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72876592	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72876594	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72878537	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72893620	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7340989	0.97[ASN][1000 genomes]
rs73839422	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73839455	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73839456	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7654865	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7655054	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7657962	0.93[ASN][1000 genomes]
rs7657975	0.95[ASN][1000 genomes]
rs7658011	0.94[ASN][1000 genomes]
rs7658701	0.95[ASN][1000 genomes]
rs7661499	0.88[ASN][1000 genomes]
rs7661565	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7662219	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662291	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662395	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662592	0.95[ASN][1000 genomes]
rs7662806	0.95[ASN][1000 genomes]
rs7662836	0.95[ASN][1000 genomes]
rs7664032	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7664188	0.95[ASN][1000 genomes]
rs7665946	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7667719	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668477	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7669087	0.95[ASN][1000 genomes]
rs7669212	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7671145	0.93[ASN][1000 genomes]
rs7673949	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7674381	0.84[ASN][1000 genomes]
rs7674460	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7674466	0.89[ASN][1000 genomes]
rs7674796	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7674931	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7675728	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7677248	0.94[ASN][1000 genomes]
rs7678229	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7678749	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7678847	0.94[ASN][1000 genomes]
rs7678943	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7681257	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7688008	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7688411	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692069	0.90[ASN][1000 genomes]
rs7692132	0.80[ASN][1000 genomes]
rs7697996	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7698386	0.94[ASN][1000 genomes]
rs7699768	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9684658	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9685018	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9685464	0.95[ASN][1000 genomes]
rs9991091	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879704	chr4:107095901-107212966	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs56333662	MGC16169	Cis_1M	lymphoblastoid	RTeQTL
rs56333662	MGC16169	cis	multi-tissue	Pritchard
rs56333662	SCYE1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107114600-107236000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:107116800-107193800	Weak transcription	Small Intestine	intestine
3	chr4:107130000-107181200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr4:107141600-107214800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:107142400-107195800	Weak transcription	Psoas Muscle	Psoas
6	chr4:107144800-107179600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:107145800-107177400	Weak transcription	Colonic Mucosa	Colon
8	chr4:107148200-107179600	Weak transcription	NH-A	brain
9	chr4:107151600-107179200	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:107153800-107184200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr4:107155200-107185400	Weak transcription	Stomach Mucosa	stomach
12	chr4:107155400-107178400	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr4:107155600-107236000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr4:107156000-107180600	Weak transcription	Brain Angular Gyrus	brain
15	chr4:107157200-107203000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:107166400-107185200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr4:107166800-107185400	Weak transcription	K562	blood
18	chr4:107167200-107191800	Weak transcription	HUVEC	blood vessel
19	chr4:107169400-107185200	Weak transcription	NHEK	skin
20	chr4:107170800-107177400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:107170800-107179200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr4:107170800-107179200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr4:107170800-107179400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr4:107170800-107182600	Weak transcription	Fetal Brain Male	brain
25	chr4:107170800-107208200	Weak transcription	Fetal Kidney	kidney
26	chr4:107171400-107179000	Weak transcription	Osteobl	bone
27	chr4:107171800-107179600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr4:107172000-107177400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr4:107172000-107178600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr4:107172000-107178600	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr4:107172000-107185400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:107172200-107185400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr4:107172200-107194800	Weak transcription	Fetal Lung	lung
34	chr4:107172800-107178800	Weak transcription	NHDF-Ad	bronchial
35	chr4:107174200-107177800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr4:107174600-107177400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr4:107174600-107178000	Genic enhancers	HepG2	liver
38	chr4:107174800-107181600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr4:107174800-107185000	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr4:107175000-107177800	Strong transcription	Liver	Liver
41	chr4:107175200-107177600	Strong transcription	Primary T cells from cord blood	blood
42	chr4:107175200-107177600	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr4:107175400-107180400	Weak transcription	Primary B cells from cord blood	blood
44	chr4:107175800-107177200	Strong transcription	Brain Germinal Matrix	brain
45	chr4:107176200-107177800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr4:107176200-107178000	Strong transcription	Duodenum Mucosa	Duodenum
47	chr4:107176400-107177200	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr4:107176400-107177200	Strong transcription	Stomach Smooth Muscle	stomach
49	chr4:107176400-107177400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr4:107176400-107177400	Strong transcription	Primary monocytes fromperipheralblood	blood

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