Variant report

Variant	rs12646263
Chromosome Location	chr4:107083746-107083747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 246 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:234)

rs_ID	r²[population]
rs10002288	0.96[ASN][1000 genomes]
rs10025052	0.96[ASN][1000 genomes]
rs10030019	0.97[ASN][1000 genomes]
rs10084928	0.97[ASN][1000 genomes]
rs10433894	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10516532	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10516533	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10516534	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11097912	0.97[ASN][1000 genomes]
rs11097914	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11097916	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11097917	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11097919	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11097924	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11097925	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11097927	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11097928	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11097929	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11930970	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11940160	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11942153	0.96[ASN][1000 genomes]
rs11947335	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12499891	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12500295	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12500775	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12501801	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12502764	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12503753	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12504704	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12504721	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12505689	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12506062	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12506658	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12507429	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12507867	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12507874	0.87[ASN][1000 genomes]
rs12508432	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12508552	0.97[ASN][1000 genomes]
rs12509366	0.97[ASN][1000 genomes]
rs12509640	0.89[ASN][1000 genomes]
rs12509865	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12510058	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12510966	0.97[ASN][1000 genomes]
rs12511305	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12512683	0.97[ASN][1000 genomes]
rs12512877	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12512903	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12512966	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12513317	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12639678	0.94[ASN][1000 genomes]
rs12639869	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12641015	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12641037	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12642059	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12642227	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12642454	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12642900	0.97[ASN][1000 genomes]
rs12643397	0.97[ASN][1000 genomes]
rs12644259	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12644596	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12645255	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12645271	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12645490	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12645698	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12645743	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12646485	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12647078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12648091	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12649709	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12651360	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13534	0.93[ASN][1000 genomes]
rs17036613	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17259572	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17273093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17273445	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17274017	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17274248	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17275217	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17333287	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17333732	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17333879	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17333899	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1988695	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2290607	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28391259	0.97[ASN][1000 genomes]
rs28507027	0.97[ASN][1000 genomes]
rs28765420	0.95[ASN][1000 genomes]
rs28787305	0.97[ASN][1000 genomes]
rs28814088	0.91[ASN][1000 genomes]
rs28822186	0.97[ASN][1000 genomes]
rs28866820	0.97[ASN][1000 genomes]
rs28868894	0.97[ASN][1000 genomes]
rs28875879	0.97[ASN][1000 genomes]
rs28897193	0.97[ASN][1000 genomes]
rs34193646	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34899289	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34961213	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35518913	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3737497	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3737498	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3762945	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3762946	0.90[ASN][1000 genomes]
rs3762947	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3775090	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3792718	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3805405	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3805407	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3805409	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3805410	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3805411	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4323181	0.97[ASN][1000 genomes]
rs4337798	0.97[ASN][1000 genomes]
rs4337799	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4339284	0.97[ASN][1000 genomes]
rs4422480	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4429790	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4458525	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4466113	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4481295	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4521418	0.96[ASN][1000 genomes]
rs4607300	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4645291	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55633564	0.97[ASN][1000 genomes]
rs55634475	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55710349	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55726133	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55753411	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55833794	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56009469	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56135499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56222430	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56231393	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56260521	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56329826	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56333662	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56341229	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56775039	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56833325	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57246774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59228887	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59784613	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60538413	0.86[ASN][1000 genomes]
rs61256759	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61544154	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62321365	0.95[ASN][1000 genomes]
rs6533240	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6533243	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6533245	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6533246	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6810877	0.95[ASN][1000 genomes]
rs6814166	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6815014	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6816614	0.97[ASN][1000 genomes]
rs6816698	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6818197	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6818626	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6819224	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6819742	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6822692	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6823347	0.96[ASN][1000 genomes]
rs6824682	0.97[ASN][1000 genomes]
rs6827816	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6828362	0.97[ASN][1000 genomes]
rs6828660	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6829795	0.97[ASN][1000 genomes]
rs6831032	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6831665	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6835216	0.97[ASN][1000 genomes]
rs6838283	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6842919	0.95[ASN][1000 genomes]
rs6843331	0.95[ASN][1000 genomes]
rs6843870	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6844324	0.97[ASN][1000 genomes]
rs6846579	0.97[ASN][1000 genomes]
rs6849341	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6856408	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6858391	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72489522	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72677306	0.97[ASN][1000 genomes]
rs72876575	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72876590	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72876592	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72876594	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72878537	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72893620	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7340989	0.90[ASN][1000 genomes]
rs73839422	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73839455	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73839456	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7654865	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7655054	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7657962	0.95[ASN][1000 genomes]
rs7657975	0.97[ASN][1000 genomes]
rs7658011	0.96[ASN][1000 genomes]
rs7658701	0.97[ASN][1000 genomes]
rs7661499	0.92[ASN][1000 genomes]
rs7661565	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7662219	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7662291	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7662395	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7662592	0.97[ASN][1000 genomes]
rs7662806	0.97[ASN][1000 genomes]
rs7662836	0.97[ASN][1000 genomes]
rs7664032	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7664188	0.97[ASN][1000 genomes]
rs7665946	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7667719	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7668477	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7669087	0.97[ASN][1000 genomes]
rs7669212	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7671145	0.95[ASN][1000 genomes]
rs7673949	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7674381	0.86[ASN][1000 genomes]
rs7674460	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7674466	0.91[ASN][1000 genomes]
rs7674796	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7674931	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7675728	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7677248	0.96[ASN][1000 genomes]
rs7678229	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7678749	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7678847	0.96[ASN][1000 genomes]
rs7678943	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7681257	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7688008	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7688411	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7692069	0.92[ASN][1000 genomes]
rs7697996	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7698386	0.96[ASN][1000 genomes]
rs7699768	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9684658	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9685018	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9685464	0.97[ASN][1000 genomes]
rs9991091	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv508301	chr4:107049086-107092730	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv1799357	chr4:107058025-107099737	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1801434	chr4:107058025-107099737	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1800933	chr4:107058025-107118662	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1802243	chr4:107058025-107118662	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1802962	chr4:107058025-107118662	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1803376	chr4:107058025-107118662	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1848076	chr4:107058334-107118662	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1851828	chr4:107059549-107118662	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv879702	chr4:107065718-107175191	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv879703	chr4:107082926-107163128	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12646263	MGC16169	cis	multi-tissue	Pritchard
rs12646263	SCYE1	Cis_1M	lymphoblastoid	RTeQTL
rs12646263	MGC16169	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107038000-107112000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:107053800-107083800	Weak transcription	Left Ventricle	heart
3	chr4:107053800-107101600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:107054000-107091000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:107054000-107113600	Weak transcription	Brain Anterior Caudate	brain
6	chr4:107066400-107151200	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:107070600-107084200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr4:107071800-107176400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:107073000-107086800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:107074200-107114400	Weak transcription	NHDF-Ad	bronchial
11	chr4:107074600-107111800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:107075200-107091000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr4:107075800-107114000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:107075800-107118200	Weak transcription	Brain Substantia Nigra	brain
15	chr4:107075800-107129600	Weak transcription	Spleen	Spleen
16	chr4:107076000-107083800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr4:107076400-107114200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr4:107077000-107089600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr4:107078000-107083800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:107078000-107107800	Weak transcription	HSMMtube	muscle
21	chr4:107078200-107116000	Weak transcription	Colonic Mucosa	Colon
22	chr4:107078600-107084200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr4:107078800-107112200	Weak transcription	Osteobl	bone
24	chr4:107078800-107114200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr4:107082400-107085000	Strong transcription	Fetal Thymus	thymus
26	chr4:107082600-107084000	ZNF genes & repeats	Fetal Brain Female	brain
27	chr4:107082600-107084800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr4:107082600-107085600	Strong transcription	Primary B cells from cord blood	blood
29	chr4:107082800-107084000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:107082800-107084200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
31	chr4:107082800-107084200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
32	chr4:107082800-107085400	Strong transcription	Primary T cells from cord blood	blood
33	chr4:107082800-107086800	Weak transcription	Fetal Heart	heart
34	chr4:107083000-107084000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:107083000-107084000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr4:107083000-107084600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr4:107083000-107084800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr4:107083000-107085000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr4:107083200-107083800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr4:107083200-107083800	ZNF genes & repeats	Brain Hippocampus Middle	brain
41	chr4:107083200-107084000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr4:107083200-107084000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
43	chr4:107083200-107084000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr4:107083200-107084000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr4:107083200-107084000	ZNF genes & repeats	Liver	Liver
46	chr4:107083200-107084000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
47	chr4:107083200-107084200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr4:107083200-107084200	ZNF genes & repeats	Fetal Lung	lung
49	chr4:107083200-107084200	ZNF genes & repeats	Fetal Stomach	stomach
50	chr4:107083200-107084400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood

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