Variant report

Variant	rs6835216
Chromosome Location	chr4:107027530-107027531
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 246 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:240)

rs_ID	r²[population]
rs10000428	0.80[CEU][hapmap]
rs10002288	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10008428	0.80[CEU][hapmap]
rs10018910	0.95[CEU][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10025052	0.99[ASN][1000 genomes]
rs10030019	0.84[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs10084928	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10433894	0.95[ASN][1000 genomes]
rs10516532	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs10516533	0.81[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs10516534	0.95[ASN][1000 genomes]
rs11097912	0.84[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs11097914	1.00[ASN][1000 genomes]
rs11097916	1.00[ASN][1000 genomes]
rs11097917	0.81[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs11097919	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs11097924	0.83[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.95[ASN][1000 genomes]
rs11097925	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs11097927	0.95[ASN][1000 genomes]
rs11097928	0.95[ASN][1000 genomes]
rs11097929	0.95[ASN][1000 genomes]
rs11725065	0.85[AMR][1000 genomes]
rs11725254	0.80[EUR][1000 genomes]
rs11940160	0.95[ASN][1000 genomes]
rs11942153	0.99[ASN][1000 genomes]
rs11947335	0.95[ASN][1000 genomes]
rs12499891	1.00[ASN][1000 genomes]
rs12500228	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12500331	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12500775	0.93[ASN][1000 genomes]
rs12502764	0.95[ASN][1000 genomes]
rs12503753	0.97[ASN][1000 genomes]
rs12504704	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs12504721	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs12505689	0.96[ASN][1000 genomes]
rs12506062	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs12506658	1.00[ASN][1000 genomes]
rs12507429	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs12507867	0.96[ASN][1000 genomes]
rs12507874	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12508432	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs12508552	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509366	1.00[ASN][1000 genomes]
rs12509640	0.83[CEU][hapmap];0.92[CHB][hapmap];0.91[ASN][1000 genomes]
rs12509865	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs12510058	0.95[ASN][1000 genomes]
rs12510966	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs12511305	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs12512683	1.00[ASN][1000 genomes]
rs12512877	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs12512903	0.83[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs12512966	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs12513317	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs12513345	0.91[CEU][hapmap]
rs12639678	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12639869	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs12641015	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs12641037	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs12642059	0.81[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs12642227	1.00[ASN][1000 genomes]
rs12642454	0.95[ASN][1000 genomes]
rs12642900	0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs12643397	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12644259	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs12644596	0.93[ASN][1000 genomes]
rs12645255	0.93[ASN][1000 genomes]
rs12645271	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12645698	0.91[ASN][1000 genomes]
rs12645743	0.90[ASN][1000 genomes]
rs12646263	0.97[ASN][1000 genomes]
rs12646485	1.00[ASN][1000 genomes]
rs12647078	1.00[ASN][1000 genomes]
rs12649709	0.95[ASN][1000 genomes]
rs12651360	0.95[ASN][1000 genomes]
rs13534	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17036613	0.83[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs17259572	0.99[ASN][1000 genomes]
rs17272618	0.95[CEU][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17273093	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs17273445	1.00[ASN][1000 genomes]
rs17274017	0.82[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs17274248	0.83[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17333287	0.86[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17333732	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs17333879	0.83[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs17333899	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs1988695	0.95[ASN][1000 genomes]
rs2290607	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs28391259	1.00[ASN][1000 genomes]
rs28507027	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28765420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28787305	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28805707	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs28814088	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28822186	1.00[ASN][1000 genomes]
rs28866820	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28868894	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28875879	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28897193	1.00[ASN][1000 genomes]
rs3109960	0.80[CEU][hapmap]
rs3113250	0.80[CEU][hapmap]
rs34193646	0.95[ASN][1000 genomes]
rs34899289	0.95[ASN][1000 genomes]
rs34961213	0.95[ASN][1000 genomes]
rs35518913	1.00[ASN][1000 genomes]
rs3737497	0.95[ASN][1000 genomes]
rs3737498	0.95[ASN][1000 genomes]
rs3762945	0.95[ASN][1000 genomes]
rs3762946	0.93[ASN][1000 genomes]
rs3762947	0.93[ASN][1000 genomes]
rs3775090	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs3792718	0.95[ASN][1000 genomes]
rs3805405	0.95[ASN][1000 genomes]
rs3805407	0.95[ASN][1000 genomes]
rs3805409	0.95[ASN][1000 genomes]
rs3805410	0.94[ASN][1000 genomes]
rs3805411	0.95[ASN][1000 genomes]
rs4323181	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4337798	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4337799	1.00[ASN][1000 genomes]
rs4339284	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4422480	1.00[ASN][1000 genomes]
rs4429790	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs4458525	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs4466113	1.00[ASN][1000 genomes]
rs4481295	0.90[ASN][1000 genomes]
rs4521418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4607300	0.93[ASN][1000 genomes]
rs4645291	0.95[ASN][1000 genomes]
rs55633564	1.00[ASN][1000 genomes]
rs55634475	1.00[ASN][1000 genomes]
rs55710349	0.95[ASN][1000 genomes]
rs55726133	0.95[ASN][1000 genomes]
rs55753411	0.95[ASN][1000 genomes]
rs55833794	1.00[ASN][1000 genomes]
rs56009469	0.95[ASN][1000 genomes]
rs56135499	1.00[ASN][1000 genomes]
rs56222430	0.91[ASN][1000 genomes]
rs56231393	0.95[ASN][1000 genomes]
rs56260521	1.00[ASN][1000 genomes]
rs56329826	1.00[ASN][1000 genomes]
rs56333662	0.95[ASN][1000 genomes]
rs56341229	1.00[ASN][1000 genomes]
rs56775039	0.95[ASN][1000 genomes]
rs56833325	0.90[ASN][1000 genomes]
rs57246774	1.00[ASN][1000 genomes]
rs59784613	1.00[ASN][1000 genomes]
rs60538413	0.89[ASN][1000 genomes]
rs61256759	0.95[ASN][1000 genomes]
rs61544154	0.95[ASN][1000 genomes]
rs62321365	0.98[ASN][1000 genomes]
rs6533240	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs6533243	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs6533245	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs6533246	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs6810877	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6814166	0.95[ASN][1000 genomes]
rs6815014	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6816614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816698	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs6818197	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs6818626	1.00[ASN][1000 genomes]
rs6819224	0.95[ASN][1000 genomes]
rs6819742	0.95[ASN][1000 genomes]
rs6822692	1.00[ASN][1000 genomes]
rs6823347	0.99[ASN][1000 genomes]
rs6824682	1.00[ASN][1000 genomes]
rs6827816	0.93[ASN][1000 genomes]
rs6828362	1.00[ASN][1000 genomes]
rs6828660	0.95[ASN][1000 genomes]
rs6829795	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6831032	0.95[ASN][1000 genomes]
rs6831665	0.93[ASN][1000 genomes]
rs6838283	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs6842919	0.97[ASN][1000 genomes]
rs6843331	0.97[ASN][1000 genomes]
rs6843870	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs6844105	0.96[CEU][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6844324	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846579	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs6849341	0.95[ASN][1000 genomes]
rs6849573	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs6853554	0.91[CEU][hapmap]
rs6856408	0.95[ASN][1000 genomes]
rs6858391	0.95[ASN][1000 genomes]
rs72489522	1.00[ASN][1000 genomes]
rs72677306	1.00[ASN][1000 genomes]
rs72876575	0.95[ASN][1000 genomes]
rs72876590	0.95[ASN][1000 genomes]
rs72876592	0.95[ASN][1000 genomes]
rs72876594	0.95[ASN][1000 genomes]
rs72878537	0.93[ASN][1000 genomes]
rs72893620	0.95[ASN][1000 genomes]
rs7340989	0.93[ASN][1000 genomes]
rs7356287	0.80[CEU][hapmap]
rs73839422	0.95[ASN][1000 genomes]
rs7655054	1.00[ASN][1000 genomes]
rs7657962	0.83[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs7657975	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7658011	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7658701	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661499	0.93[ASN][1000 genomes]
rs7661565	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs7662219	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7662291	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7662395	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7662592	0.84[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs7662806	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662836	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664032	1.00[ASN][1000 genomes]
rs7664188	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7665946	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7667719	0.95[ASN][1000 genomes]
rs7668276	0.80[CEU][hapmap]
rs7668477	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7669087	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7669212	0.95[ASN][1000 genomes]
rs7671145	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7673101	0.80[CEU][hapmap]
rs7673949	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7674381	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7674466	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7674796	0.83[ASN][1000 genomes]
rs7674931	0.95[ASN][1000 genomes]
rs7675728	0.96[ASN][1000 genomes]
rs7677248	0.99[ASN][1000 genomes]
rs7678229	0.83[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];1.00[ASN][1000 genomes]
rs7678847	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs7681257	0.82[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs7682646	0.80[CEU][hapmap]
rs7688008	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7688411	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7692069	0.95[ASN][1000 genomes]
rs7697996	0.95[ASN][1000 genomes]
rs7698386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7699768	0.82[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs9684658	0.95[ASN][1000 genomes]
rs9685018	0.97[ASN][1000 genomes]
rs9685464	1.00[ASN][1000 genomes]
rs9991091	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799793	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1801716	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1849248	chr4:107000462-107062671	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1850577	chr4:107000462-107062671	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv511247	chr4:107022702-107065220	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6835216	MGC16169	Cis_1M	lymphoblastoid	RTeQTL
rs6835216	MGC16169	cis	multi-tissue	Pritchard
rs6835216	SCYE1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106997200-107031000	Weak transcription	Psoas Muscle	Psoas
2	chr4:107012600-107029800	Weak transcription	Fetal Brain Male	brain
3	chr4:107012600-107029800	Weak transcription	Dnd41	blood
4	chr4:107012600-107031200	Weak transcription	Brain Angular Gyrus	brain
5	chr4:107012600-107033200	Weak transcription	Osteobl	bone
6	chr4:107012600-107033800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr4:107012600-107034400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:107012600-107038400	Weak transcription	NHDF-Ad	bronchial
9	chr4:107012800-107030600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:107012800-107031400	Weak transcription	HSMMtube	muscle
11	chr4:107012800-107033400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:107013000-107031000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:107014000-107029800	Weak transcription	Brain Germinal Matrix	brain
14	chr4:107014000-107031000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:107014000-107031000	Weak transcription	Fetal Thymus	thymus
16	chr4:107014000-107031200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr4:107014000-107034600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr4:107014200-107029200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr4:107014200-107030600	Weak transcription	Right Ventricle	heart
20	chr4:107014200-107030800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr4:107014200-107031000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr4:107014200-107031200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:107014200-107031200	Weak transcription	Colonic Mucosa	Colon
24	chr4:107014200-107031200	Weak transcription	Gastric	stomach
25	chr4:107014400-107029400	Weak transcription	Colon Smooth Muscle	Colon
26	chr4:107014400-107031200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr4:107014600-107031200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr4:107014800-107028600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr4:107014800-107031200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr4:107020000-107029000	Weak transcription	Fetal Lung	lung
31	chr4:107024600-107028000	Strong transcription	Primary T cells from cord blood	blood
32	chr4:107024600-107028000	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr4:107024600-107028000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr4:107024600-107028000	Strong transcription	Adipose Nuclei	Adipose
35	chr4:107024600-107028600	Strong transcription	Liver	Liver
36	chr4:107024800-107027600	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr4:107024800-107027800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr4:107025000-107028000	Strong transcription	Left Ventricle	heart
39	chr4:107025000-107028000	Strong transcription	HepG2	liver
40	chr4:107025200-107029400	Weak transcription	Fetal Heart	heart
41	chr4:107025400-107027600	Weak transcription	Brain Anterior Caudate	brain
42	chr4:107025400-107031000	Weak transcription	Lung	lung
43	chr4:107025400-107031200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr4:107025600-107031000	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr4:107025600-107031000	Weak transcription	Thymus	Thymus
46	chr4:107025600-107031200	Weak transcription	Pancreas	Pancrea
47	chr4:107026000-107027600	Strong transcription	Primary B cells from peripheral blood	blood
48	chr4:107026000-107028000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr4:107026000-107028000	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr4:107026200-107031000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links