The 2.0 version of rSNPBase

Variant report

Variant rs56009469
Chromosome Location chr4:107180715-107180716
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:107114600-107236000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr4:107116800-107193800 Weak transcription Small Intestine intestine
3 chr4:107130000-107181200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr4:107141600-107214800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr4:107142400-107195800 Weak transcription Psoas Muscle Psoas
6 chr4:107153800-107184200 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr4:107155200-107185400 Weak transcription Stomach Mucosa stomach
8 chr4:107155600-107236000 Weak transcription Primary T killer naive cells fromperipheralblood blood
9 chr4:107157200-107203000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr4:107166400-107185200 Weak transcription Placenta Amnion Placenta Amnion
11 chr4:107166800-107185400 Weak transcription K562 blood
12 chr4:107167200-107191800 Weak transcription HUVEC blood vessel
13 chr4:107169400-107185200 Weak transcription NHEK skin
14 chr4:107170800-107182600 Weak transcription Fetal Brain Male brain
15 chr4:107170800-107208200 Weak transcription Fetal Kidney kidney
16 chr4:107172000-107185400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr4:107172200-107185400 Weak transcription Rectal Mucosa Donor 31 rectum
18 chr4:107172200-107194800 Weak transcription Fetal Lung lung
19 chr4:107174800-107181600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
20 chr4:107174800-107185000 Weak transcription Pancreatic Islets Pancreatic Islet
21 chr4:107177000-107181000 Weak transcription HSMM muscle
22 chr4:107177400-107186000 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr4:107177400-107189800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr4:107177400-107207600 Weak transcription Fetal Brain Female brain
25 chr4:107177600-107183400 Weak transcription Primary T regulatory cells fromperipheralblood blood
26 chr4:107177600-107202600 Weak transcription Primary T cells from cord blood blood
27 chr4:107177600-107205600 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr4:107177800-107181000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
29 chr4:107177800-107181600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr4:107177800-107181800 Weak transcription Liver Liver
31 chr4:107177800-107184600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr4:107177800-107196000 Weak transcription Breast Myoepithelial Primary Cells Breast
33 chr4:107177800-107207600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr4:107177800-107207600 Weak transcription Adipose Nuclei Adipose
35 chr4:107177800-107211600 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr4:107177800-107215200 Weak transcription Brain Hippocampus Middle brain
37 chr4:107178000-107180800 Weak transcription Dnd41 blood
38 chr4:107178000-107181800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr4:107178000-107182000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr4:107178000-107182400 Weak transcription Fetal Intestine Small intestine
41 chr4:107178000-107184400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
42 chr4:107178000-107185200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr4:107178000-107185200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr4:107178000-107185400 Weak transcription Duodenum Mucosa Duodenum
45 chr4:107178000-107188200 Enhancers HepG2 liver
46 chr4:107178000-107194600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr4:107178000-107194600 Weak transcription Primary hematopoietic stem cells blood
48 chr4:107178000-107194800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr4:107178000-107195800 Weak transcription Primary hematopoietic stem cells short term culture blood
50 chr4:107178000-107199400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015