Variant report

Variant	rs12512966
Chromosome Location	chr4:107082411-107082412
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 248 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:236)

rs_ID	r²[population]
rs10002288	0.99[ASN][1000 genomes]
rs10016884	0.86[ASW][hapmap];0.95[CEU][hapmap]
rs10025052	0.99[ASN][1000 genomes]
rs10030019	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10084928	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[ASN][1000 genomes]
rs10433894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10516532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10516534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097912	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11097914	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097916	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097919	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097924	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097928	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097929	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11930970	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11940160	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11942153	0.99[ASN][1000 genomes]
rs11947335	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12499891	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12500295	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12500331	0.80[ASN][1000 genomes]
rs12500775	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12501801	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12502764	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12503753	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12504704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12504721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12505689	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12506062	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12506658	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507429	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12507867	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12507874	0.90[ASN][1000 genomes]
rs12508432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12508552	1.00[ASN][1000 genomes]
rs12509366	1.00[ASN][1000 genomes]
rs12509640	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs12509865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12510058	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12510966	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12511305	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12512683	1.00[ASN][1000 genomes]
rs12512877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12512903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12513317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12639678	0.96[ASN][1000 genomes]
rs12639869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12641015	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12641037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12642059	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12642227	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12642900	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12643397	1.00[ASN][1000 genomes]
rs12644259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12644596	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12645255	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12645271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12645490	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645698	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12645743	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12646263	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12646485	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12647078	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12648091	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12649709	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12651360	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13534	0.95[ASN][1000 genomes]
rs17036613	0.92[ASW][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17259572	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17273093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17273445	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17274017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17274248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17275217	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17333287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17333732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17333879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17333899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1988695	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2290607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28391259	1.00[ASN][1000 genomes]
rs28507027	1.00[ASN][1000 genomes]
rs28765420	0.98[ASN][1000 genomes]
rs28787305	1.00[ASN][1000 genomes]
rs28814088	0.94[ASN][1000 genomes]
rs28822186	1.00[ASN][1000 genomes]
rs28866820	1.00[ASN][1000 genomes]
rs28868894	1.00[ASN][1000 genomes]
rs28875879	1.00[ASN][1000 genomes]
rs28897193	1.00[ASN][1000 genomes]
rs34193646	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34899289	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34961213	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35518913	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737497	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3737498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3762945	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3762946	0.93[ASN][1000 genomes]
rs3762947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3775090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3792718	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805405	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805407	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3805411	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4323181	1.00[ASN][1000 genomes]
rs4337798	1.00[ASN][1000 genomes]
rs4337799	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4339284	1.00[ASN][1000 genomes]
rs4422480	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4429790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4458525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4466113	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4481295	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4521418	0.99[ASN][1000 genomes]
rs4607300	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4645291	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55633564	1.00[ASN][1000 genomes]
rs55634475	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55710349	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55726133	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55753411	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55833794	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56009469	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56135499	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56222430	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56231393	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56260521	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56329826	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56333662	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56341229	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56775039	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56833325	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57246774	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59228887	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59784613	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60538413	0.89[ASN][1000 genomes]
rs61256759	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61544154	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62321365	0.98[ASN][1000 genomes]
rs6533240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6533245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6533246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6810877	0.98[ASN][1000 genomes]
rs6814166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6815014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816614	1.00[ASN][1000 genomes]
rs6816698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6818197	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6818626	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6819224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6819742	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6822692	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823347	0.99[ASN][1000 genomes]
rs6824682	1.00[ASN][1000 genomes]
rs6827816	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6828362	1.00[ASN][1000 genomes]
rs6828660	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6829795	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs6831032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6831665	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6835216	0.81[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs6838283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6842919	0.97[ASN][1000 genomes]
rs6843331	0.97[ASN][1000 genomes]
rs6843870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844324	1.00[ASN][1000 genomes]
rs6846579	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6849341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6856408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6858391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72489522	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72677306	1.00[ASN][1000 genomes]
rs72876575	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72876590	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72876592	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72876594	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72878537	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72893620	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7340989	0.93[ASN][1000 genomes]
rs73839422	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73839455	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73839456	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7654865	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7655054	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7657962	0.92[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs7657975	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7658011	0.99[ASN][1000 genomes]
rs7658701	1.00[ASN][1000 genomes]
rs7661499	0.93[ASN][1000 genomes]
rs7661565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7662291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7662395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7662592	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7662806	1.00[ASN][1000 genomes]
rs7662836	1.00[ASN][1000 genomes]
rs7664032	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664188	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7665946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7667719	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7668477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7669087	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs7669212	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7671145	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.98[ASN][1000 genomes]
rs7673949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7674381	0.89[ASN][1000 genomes]
rs7674460	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7674466	0.94[ASN][1000 genomes]
rs7674796	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7674931	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7675728	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7677248	0.99[ASN][1000 genomes]
rs7678229	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7678749	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7678847	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7678943	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7681257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7688411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7692069	0.95[ASN][1000 genomes]
rs7697996	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7698386	0.99[ASN][1000 genomes]
rs7699768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9684658	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9685018	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9685464	1.00[ASN][1000 genomes]
rs9991091	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv4450	chr4:107037823-107082669	Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv508301	chr4:107049086-107092730	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv1799357	chr4:107058025-107099737	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1801434	chr4:107058025-107099737	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1800933	chr4:107058025-107118662	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1802243	chr4:107058025-107118662	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1802962	chr4:107058025-107118662	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1803376	chr4:107058025-107118662	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1848076	chr4:107058334-107118662	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv1851828	chr4:107059549-107118662	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv879702	chr4:107065718-107175191	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs12512966	TBCK	cis	lymphoblastoid	seeQTL
rs12512966	TBCK	cis	Lymphoblastoid	GTEx
rs12512966	SCYE1	Cis_1M	lymphoblastoid	RTeQTL
rs12512966	MGC16169	Cis_1M	lymphoblastoid	RTeQTL
rs12512966	MGC16169	cis	multi-tissue	Pritchard
rs12512966	TBCK	cis	parietal	SCAN
rs12512966	TBCK	cis	cerebellum	SCAN

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107035600-107083200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:107038000-107112000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:107053800-107083400	Weak transcription	HSMM	muscle
4	chr4:107053800-107083800	Weak transcription	Left Ventricle	heart
5	chr4:107053800-107101600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr4:107054000-107083200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:107054000-107083400	Weak transcription	Pancreas	Pancrea
8	chr4:107054000-107091000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:107054000-107113600	Weak transcription	Brain Anterior Caudate	brain
10	chr4:107054200-107083400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:107056200-107083400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:107065000-107083400	Weak transcription	Brain Germinal Matrix	brain
13	chr4:107066400-107151200	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:107067400-107083600	Weak transcription	Fetal Kidney	kidney
15	chr4:107067800-107082600	Weak transcription	Fetal Brain Male	brain
16	chr4:107068600-107083200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:107068600-107083600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:107070200-107083200	Weak transcription	Brain Hippocampus Middle	brain
19	chr4:107070200-107083400	Weak transcription	Fetal Muscle Leg	muscle
20	chr4:107070400-107083200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr4:107070600-107084200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr4:107071400-107083000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:107071800-107176400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr4:107072000-107083000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:107072200-107083400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr4:107073000-107082800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr4:107073000-107086800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr4:107073400-107083000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr4:107074000-107082600	Weak transcription	Fetal Brain Female	brain
30	chr4:107074200-107114400	Weak transcription	NHDF-Ad	bronchial
31	chr4:107074400-107083400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr4:107074600-107111800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr4:107075000-107082800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:107075200-107091000	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr4:107075400-107083200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr4:107075800-107114000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr4:107075800-107118200	Weak transcription	Brain Substantia Nigra	brain
38	chr4:107075800-107129600	Weak transcription	Spleen	Spleen
39	chr4:107076000-107083800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr4:107076400-107083600	Weak transcription	Primary B cells from peripheral blood	blood
41	chr4:107076400-107114200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr4:107076800-107083600	Weak transcription	Thymus	Thymus
43	chr4:107077000-107089600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr4:107077600-107083400	Weak transcription	Esophagus	oesophagus
45	chr4:107077800-107083000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr4:107077800-107083200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr4:107077800-107083200	Weak transcription	Fetal Lung	lung
48	chr4:107078000-107083200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr4:107078000-107083400	Weak transcription	Gastric	stomach
50	chr4:107078000-107083600	Weak transcription	Dnd41	blood

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