Variant report

Variant	rs3805405
Chromosome Location	chr4:107238885-107238886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr4:107236575-107239230	IMR90	lung:	n/a	n/a
2	POLR2A	chr4:107236164-107239299	GM12878	blood:	n/a	n/a
3	POLR2A	chr4:107236078-107240087	K562	blood:	n/a	n/a
4	POLR2A	chr4:107236087-107238920	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr4:107236150-107239192	HepG2	liver:	n/a	n/a
6	POLR2A	chr4:107236165-107239379	IMR90	lung:	n/a	n/a
7	POLR2A	chr4:107236566-107238918	HepG2	liver:	n/a	n/a
8	POLR2A	chr4:107238816-107239285	HepG2	liver:	n/a	n/a
9	POLR2A	chr4:107236452-107238956	ProgFib	skin:	n/a	n/a
10	POLR2A	chr4:107236059-107239397	HepG2	liver:	n/a	n/a
11	STAT3	chr4:107238581-107239041	MCF10A-Er-Src	breast:	n/a	n/a
12	HEY1	chr4:107236097-107239161	HepG2	liver:	n/a	n/a
13	MAZ	chr4:107236869-107239009	IMR90	lung:	n/a	n/a
14	TBP	chr4:107236182-107238958	K562	blood:	n/a	n/a
15	POLR2A	chr4:107236656-107238929	GM12878	blood:	n/a	n/a
16	POLR2A	chr4:107236519-107239214	GM18505	blood:	n/a	n/a
17	HEY1	chr4:107235975-107239381	HepG2	liver:	n/a	n/a
18	POLR2A	chr4:107236175-107239319	GM12891	blood:	n/a	n/a
19	POLR2A	chr4:107236155-107239882	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:107237524..107239037-chr4:107241153..107242940,2	MCF-7	breast:
2	chr4:107226289..107231817-chr4:107234990..107238909,9	MCF-7	breast:
3	chr4:107238766..107241197-chr4:107243663..107246436,3	MCF-7	breast:

No data

Variant related genes	Relation type
TBCK	TF binding region
ENSG00000145348	Chromatin interaction

Extended variants
information (count: 205 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:203)

rs_ID	r²[population]
rs10084928	0.95[ASN][1000 genomes]
rs10433894	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516532	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10516533	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10516534	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097912	0.95[ASN][1000 genomes]
rs11097914	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097916	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097917	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097919	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097924	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097925	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097927	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097928	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097929	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11930970	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11940160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11947335	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12499891	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12500295	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12500775	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12501801	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12502764	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12503753	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12504704	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12504721	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12506062	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12506658	0.95[ASN][1000 genomes]
rs12507429	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12507874	0.85[ASN][1000 genomes]
rs12508432	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12508552	0.95[ASN][1000 genomes]
rs12509366	0.95[ASN][1000 genomes]
rs12509865	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12510058	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12511305	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12512683	0.95[ASN][1000 genomes]
rs12512877	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12512903	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12512966	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12639869	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12641015	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12641037	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12642059	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12642227	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12642454	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642900	0.95[ASN][1000 genomes]
rs12643397	0.95[ASN][1000 genomes]
rs12644259	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12644596	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12645255	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12645271	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645490	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12645698	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12645743	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12646263	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12646485	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12647078	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12648091	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12649709	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12651360	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13534	1.00[ASN][1000 genomes]
rs17036613	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17273093	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17273445	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17274017	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17274248	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17275217	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17333287	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17333732	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17333879	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17333899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1988695	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2290607	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28391259	0.95[ASN][1000 genomes]
rs28507027	0.95[ASN][1000 genomes]
rs28765420	0.93[ASN][1000 genomes]
rs28787305	0.95[ASN][1000 genomes]
rs28814088	0.89[ASN][1000 genomes]
rs28822186	0.95[ASN][1000 genomes]
rs28866820	0.95[ASN][1000 genomes]
rs28868894	0.95[ASN][1000 genomes]
rs28875879	0.95[ASN][1000 genomes]
rs28897193	0.95[ASN][1000 genomes]
rs34193646	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34899289	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34961213	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3737497	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737498	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762945	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762946	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3762947	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3775090	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3792718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805409	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805410	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3805411	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4323181	0.95[ASN][1000 genomes]
rs4337798	0.95[ASN][1000 genomes]
rs4337799	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4339284	0.95[ASN][1000 genomes]
rs4422480	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4429790	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4458525	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4466113	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4481295	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4521418	0.94[ASN][1000 genomes]
rs4607300	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4645291	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55634475	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55710349	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55726133	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55753411	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55833794	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56009469	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56135499	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56231393	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56260521	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56329826	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56333662	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56341229	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56775039	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56833325	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57246774	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59228887	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59784613	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61256759	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61544154	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62321365	0.93[ASN][1000 genomes]
rs6533240	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6533243	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6533245	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6533246	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6810877	0.93[ASN][1000 genomes]
rs6814166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6815014	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6816614	0.95[ASN][1000 genomes]
rs6816698	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6818197	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6818626	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6819224	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6819742	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822692	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6824682	0.95[ASN][1000 genomes]
rs6827816	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6828660	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6829795	0.95[ASN][1000 genomes]
rs6831032	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6831665	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6835216	0.95[ASN][1000 genomes]
rs6838283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6843870	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6844324	0.95[ASN][1000 genomes]
rs6846579	0.95[ASN][1000 genomes]
rs6849341	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856408	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6858391	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72489522	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72876575	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72876590	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72876592	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72876594	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72878537	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72893620	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7340989	0.93[ASN][1000 genomes]
rs73839422	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73839455	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73839456	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654865	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655054	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7657975	0.95[ASN][1000 genomes]
rs7658701	0.95[ASN][1000 genomes]
rs7661499	0.88[ASN][1000 genomes]
rs7661565	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7662219	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7662291	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7662395	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7662592	0.95[ASN][1000 genomes]
rs7664032	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7664188	0.95[ASN][1000 genomes]
rs7665946	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7667719	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7668477	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7669087	0.95[ASN][1000 genomes]
rs7669212	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7671145	0.93[ASN][1000 genomes]
rs7673949	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7674381	0.84[ASN][1000 genomes]
rs7674460	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7674466	0.89[ASN][1000 genomes]
rs7674796	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7674931	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7678229	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7678749	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7678943	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688008	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7688411	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7697996	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7698386	0.94[ASN][1000 genomes]
rs7699768	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9684658	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9685018	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1819960	chr4:107216320-107246136	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3805405	MGC16169	Cis_1M	lymphoblastoid	RTeQTL
rs3805405	SCYE1	Cis_1M	lymphoblastoid	RTeQTL
rs3805405	MGC16169	cis	multi-tissue	Pritchard

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107235200-107239000	Active TSS	GM12878-XiMat	blood
2	chr4:107235200-107239000	Active TSS	K562	blood
3	chr4:107235600-107239400	Active TSS	A549	lung
4	chr4:107236200-107239000	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr4:107236200-107239000	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr4:107236200-107239000	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr4:107236200-107239000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:107236200-107239000	Active TSS	Aorta	Aorta
9	chr4:107236200-107239000	Active TSS	Psoas Muscle	Psoas
10	chr4:107236200-107240000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:107236400-107239000	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr4:107236400-107239200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:107236400-107239400	Active TSS	Colonic Mucosa	Colon
14	chr4:107236600-107239000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr4:107237400-107239000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:107238000-107239000	Flanking Active TSS	Primary hematopoietic stem cells	blood
17	chr4:107238000-107239400	Flanking Active TSS	Primary T cells from cord blood	blood
18	chr4:107238000-107239400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:107238200-107239000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
20	chr4:107238200-107239000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr4:107238200-107239000	Flanking Active TSS	Brain Cingulate Gyrus	brain
22	chr4:107238200-107239000	Flanking Active TSS	Colon Smooth Muscle	Colon
23	chr4:107238200-107239000	Flanking Active TSS	Fetal Brain Female	brain
24	chr4:107238200-107239000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr4:107238200-107239000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr4:107238200-107239200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr4:107238200-107239200	Flanking Active TSS	Fetal Lung	lung
28	chr4:107238200-107239200	Flanking Active TSS	HMEC	breast
29	chr4:107238200-107239400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
30	chr4:107238200-107239400	Flanking Active TSS	Liver	Liver
31	chr4:107238200-107239600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
32	chr4:107238200-107240000	Flanking Active TSS	Osteobl	bone
33	chr4:107238200-107240800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr4:107238400-107239000	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr4:107238400-107239000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr4:107238400-107239000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
37	chr4:107238400-107239000	Flanking Active TSS	Stomach Smooth Muscle	stomach
38	chr4:107238400-107239200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr4:107238400-107239200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr4:107238400-107239200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
41	chr4:107238400-107239200	Flanking Active TSS	Rectal Smooth Muscle	rectum
42	chr4:107238400-107239200	Flanking Active TSS	Hela-S3	cervix
43	chr4:107238400-107239200	Flanking Active TSS	HUVEC	blood vessel
44	chr4:107238400-107239200	Flanking Active TSS	NHEK	skin
45	chr4:107238400-107239400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr4:107238400-107239400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
47	chr4:107238400-107239400	Flanking Active TSS	NHDF-Ad	bronchial
48	chr4:107238400-107239600	Active TSS	HepG2	liver
49	chr4:107238400-107240000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr4:107238400-107240000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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