Variant report

Variant	rs7662291
Chromosome Location	chr4:107185593-107185594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:107180191..107183024-chr4:107184999..107187172,2	MCF-7	breast:
2	chr4:107183968..107186758-chr4:107242517..107245278,3	K562	blood:
3	chr4:107184193..107185780-chr4:107235786..107237913,2	K562	blood:

Variant related genes	Relation type
ENSG00000145348	Chromatin interaction
ENSG00000164022	Chromatin interaction

Extended variants
information (count: 238 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:236)

rs_ID	r²[population]
rs10002288	0.94[ASN][1000 genomes]
rs10016884	0.95[CEU][hapmap]
rs10025052	0.94[ASN][1000 genomes]
rs10030019	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10084928	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10433894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10516532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10516533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097912	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11097914	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097916	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097924	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097928	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097929	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11930970	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11940160	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11942153	0.94[ASN][1000 genomes]
rs11947335	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12499891	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12500295	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12500775	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12501801	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12502764	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12503753	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12504704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12504721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505689	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12506062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12506658	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12507429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12507867	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12507874	0.88[ASN][1000 genomes]
rs12508432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12508552	0.95[ASN][1000 genomes]
rs12509366	0.95[ASN][1000 genomes]
rs12509640	1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs12509865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12510058	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12510966	0.95[ASN][1000 genomes]
rs12511305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12512683	0.95[ASN][1000 genomes]
rs12512877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12512903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12512966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12513317	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12639678	0.91[ASN][1000 genomes]
rs12639869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12641015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12641037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12642059	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642227	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12642454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12642900	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12643397	0.95[ASN][1000 genomes]
rs12644259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12644596	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12645255	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12645271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645490	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645698	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12645743	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12646263	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12646485	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12647078	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12648091	0.84[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12649709	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12651360	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13534	0.95[ASN][1000 genomes]
rs17036613	0.92[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17259572	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17273093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17273445	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17274017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17274248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17275217	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17333287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17333732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17333879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17333899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1988695	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2290607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28391259	0.95[ASN][1000 genomes]
rs28507027	0.95[ASN][1000 genomes]
rs28765420	0.93[ASN][1000 genomes]
rs28787305	0.95[ASN][1000 genomes]
rs28814088	0.89[ASN][1000 genomes]
rs28822186	0.95[ASN][1000 genomes]
rs28866820	0.95[ASN][1000 genomes]
rs28868894	0.95[ASN][1000 genomes]
rs28875879	0.95[ASN][1000 genomes]
rs28897193	0.95[ASN][1000 genomes]
rs34193646	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34899289	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34961213	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35518913	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3737497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3737498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3762945	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3762946	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3762947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3775090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792718	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805405	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805407	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3805411	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4323181	0.95[ASN][1000 genomes]
rs4337798	0.95[ASN][1000 genomes]
rs4337799	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4339284	0.95[ASN][1000 genomes]
rs4422480	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4429790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4458525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4466113	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4481295	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4521418	0.94[ASN][1000 genomes]
rs4607300	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4645291	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55633564	0.95[ASN][1000 genomes]
rs55634475	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55710349	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55726133	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55753411	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55833794	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56009469	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56135499	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56222430	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56231393	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56260521	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56329826	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56333662	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56341229	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56775039	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56833325	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57246774	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59228887	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59784613	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60538413	0.84[ASN][1000 genomes]
rs61256759	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61544154	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321365	0.93[ASN][1000 genomes]
rs6533240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6533243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6810877	0.93[ASN][1000 genomes]
rs6814166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6815014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6816614	0.95[ASN][1000 genomes]
rs6816698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6818197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6818626	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6819224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6819742	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6822692	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6823347	0.94[ASN][1000 genomes]
rs6824682	0.95[ASN][1000 genomes]
rs6827816	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6828362	0.95[ASN][1000 genomes]
rs6828660	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6829795	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6831032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6831665	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6835216	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs6838283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6842919	0.93[ASN][1000 genomes]
rs6843331	0.93[ASN][1000 genomes]
rs6843870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6844324	0.95[ASN][1000 genomes]
rs6846579	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6849341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6856408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6858391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72489522	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72677306	0.95[ASN][1000 genomes]
rs72876575	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72876590	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72876592	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72876594	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72878537	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72893620	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7340989	0.97[ASN][1000 genomes]
rs73839422	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73839455	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73839456	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7654865	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7655054	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7657962	0.93[ASN][1000 genomes]
rs7657975	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7658011	0.94[ASN][1000 genomes]
rs7658701	0.95[ASN][1000 genomes]
rs7661499	0.88[ASN][1000 genomes]
rs7661565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7662219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7662806	0.95[ASN][1000 genomes]
rs7662836	0.95[ASN][1000 genomes]
rs7664032	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7664188	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7665946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7667719	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7669087	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7669212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7671145	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7673949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7674381	0.84[ASN][1000 genomes]
rs7674460	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7674466	0.89[ASN][1000 genomes]
rs7674796	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7674931	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7675728	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7677248	0.94[ASN][1000 genomes]
rs7678229	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7678749	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7678847	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7678943	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7681257	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7688008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7688411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692069	0.90[ASN][1000 genomes]
rs7692132	0.80[ASN][1000 genomes]
rs7697996	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7698386	0.94[ASN][1000 genomes]
rs7699768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9684658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9685018	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9685464	0.95[ASN][1000 genomes]
rs9991091	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879704	chr4:107095901-107212966	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879705	chr4:107179126-107212966	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7662291	TBCK	cis	Lymphoblastoid	GTEx
rs7662291	MGC16169	cis	multi-tissue	Pritchard
rs7662291	MGC16169	Cis_1M	lymphoblastoid	RTeQTL
rs7662291	SCYE1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107114600-107236000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:107116800-107193800	Weak transcription	Small Intestine	intestine
3	chr4:107141600-107214800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:107142400-107195800	Weak transcription	Psoas Muscle	Psoas
5	chr4:107155600-107236000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr4:107157200-107203000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:107167200-107191800	Weak transcription	HUVEC	blood vessel
8	chr4:107170800-107208200	Weak transcription	Fetal Kidney	kidney
9	chr4:107172200-107194800	Weak transcription	Fetal Lung	lung
10	chr4:107177400-107186000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr4:107177400-107189800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:107177400-107207600	Weak transcription	Fetal Brain Female	brain
13	chr4:107177600-107202600	Weak transcription	Primary T cells from cord blood	blood
14	chr4:107177600-107205600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:107177800-107196000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:107177800-107207600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:107177800-107207600	Weak transcription	Adipose Nuclei	Adipose
18	chr4:107177800-107211600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr4:107177800-107215200	Weak transcription	Brain Hippocampus Middle	brain
20	chr4:107178000-107188200	Enhancers	HepG2	liver
21	chr4:107178000-107194600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr4:107178000-107194600	Weak transcription	Primary hematopoietic stem cells	blood
23	chr4:107178000-107194800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:107178000-107195800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr4:107178000-107199400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:107178000-107205400	Weak transcription	Thymus	Thymus
27	chr4:107178000-107207800	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr4:107178000-107207800	Weak transcription	Lung	lung
29	chr4:107178000-107207800	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr4:107178000-107208200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr4:107178000-107208400	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr4:107178000-107211800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr4:107178000-107211800	Weak transcription	Fetal Muscle Trunk	muscle
34	chr4:107178000-107211800	Weak transcription	Fetal Muscle Leg	muscle
35	chr4:107178000-107211800	Weak transcription	Fetal Stomach	stomach
36	chr4:107178000-107211800	Weak transcription	Left Ventricle	heart
37	chr4:107178000-107211800	Weak transcription	Ovary	ovary
38	chr4:107178000-107236200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr4:107178000-107236200	Weak transcription	Right Ventricle	heart
40	chr4:107178000-107236600	Weak transcription	Esophagus	oesophagus
41	chr4:107178000-107236600	Weak transcription	Pancreas	Pancrea
42	chr4:107178200-107211600	Weak transcription	Placenta	Placenta
43	chr4:107178200-107236000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr4:107178400-107194600	Weak transcription	GM12878-XiMat	blood
45	chr4:107178400-107198800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr4:107179000-107211400	Weak transcription	Primary B cells from peripheral blood	blood
47	chr4:107179800-107191400	Weak transcription	HSMMtube	muscle
48	chr4:107179800-107208600	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr4:107180000-107194800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr4:107180200-107191000	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links