Variant report

Variant	rs3762947
Chromosome Location	chr4:107236648-107236649
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:112)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:112 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr4:107236553-107236775	HL-60	blood:	n/a	chr4:107236688-107236695
2	FOS	chr4:107236580-107237035	MCF10A-Er-Src	breast:	n/a	chr4:107236681-107236690
3	MXI1	chr4:107235967-107238818	SK-N-SH	brain:	n/a	n/a
4	RFX5	chr4:107236341-107238091	Hela-S3	cervix:	n/a	n/a
5	TBP	chr4:107236637-107238183	HepG2	liver:	n/a	n/a
6	POLR2A	chr4:107236617-107238518	GM12891	blood:	n/a	n/a
7	POLR2A	chr4:107236627-107238088	GM12891	blood:	n/a	n/a
8	MXI1	chr4:107236575-107239230	IMR90	lung:	n/a	n/a
9	HEY1	chr4:107236539-107237553	K562	blood:	n/a	n/a
10	ZNF384	chr4:107236139-107236962	K562	blood:	n/a	n/a
11	POLR2A	chr4:107236164-107239299	GM12878	blood:	n/a	n/a
12	JUND	chr4:107236271-107237928	K562	blood:	n/a	chr4:107236681-107236690
13	POLR2A	chr4:107236524-107238338	GM12892	blood:	n/a	n/a
14	POLR2A	chr4:107236591-107238068	K562	blood:	n/a	n/a
15	POLR2A	chr4:107236520-107238647	GM12878	blood:	n/a	n/a
16	POLR2A	chr4:107236605-107238109	H1-hESC	embryonic stem cell:	n/a	n/a
17	STAT3	chr4:107236632-107237077	MCF10A-Er-Src	breast:	n/a	n/a
18	POLR2A	chr4:107236612-107238425	GM12892	blood:	n/a	n/a
19	MAZ	chr4:107236573-107237957	GM12878	blood:	n/a	n/a
20	TAF1	chr4:107236619-107237955	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr4:107236078-107240087	K562	blood:	n/a	n/a
22	POLR2A	chr4:107236538-107237004	SK-N-SH	brain:	n/a	n/a
23	TBP	chr4:107236579-107237972	Hela-S3	cervix:	n/a	n/a
24	RCOR1	chr4:107236612-107237940	K562	blood:	n/a	n/a
25	POLR2A	chr4:107236526-107238694	GM12892	blood:	n/a	n/a
26	POLR2A	chr4:107236561-107238680	HUVEC	blood vessel:	n/a	n/a
27	POLR2A	chr4:107236383-107238707	HUVEC	blood vessel:	n/a	n/a
28	POLR2A	chr4:107236559-107237983	Hela-S3	cervix:	n/a	n/a
29	POLR2A	chr4:107236557-107238273	HL-60	blood:	n/a	n/a
30	MYC	chr4:107236600-107236986	MCF10A-Er-Src	breast:	n/a	n/a
31	POLR2A	chr4:107236087-107238920	MCF10A-Er-Src	breast:	n/a	n/a
32	SPI1	chr4:107236528-107236944	HL-60	blood:	n/a	chr4:107236688-107236695
33	BHLHE40	chr4:107236263-107238635	K562	blood:	n/a	chr4:107237160-107237176
34	TAF1	chr4:107236611-107238130	H1-hESC	embryonic stem cell:	n/a	n/a
35	POLR2A	chr4:107236642-107238641	PBDE	blood:	n/a	n/a
36	POLR2A	chr4:107236354-107238745	K562	blood:	n/a	n/a
37	POLR2A	chr4:107236273-107238558	GM19099	blood:	n/a	n/a
38	POLR2A	chr4:107236510-107238141	K562	blood:	n/a	n/a
39	POLR2A	chr4:107236150-107239192	HepG2	liver:	n/a	n/a
40	MYC	chr4:107236641-107238654	NB4	blood:	n/a	n/a
41	POLR2A	chr4:107236623-107238011	GM12891	blood:	n/a	n/a
42	POLR2A	chr4:107236550-107238618	Hela-S3	cervix:	n/a	n/a
43	POLR2A	chr4:107236165-107239379	IMR90	lung:	n/a	n/a
44	BCLAF1	chr4:107236610-107238013	GM12878	blood:	n/a	n/a
45	FOS	chr4:107236626-107237035	MCF10A-Er-Src	breast:	n/a	chr4:107236681-107236690
46	UBTF	chr4:107236602-107236873	K562	blood:	n/a	n/a
47	POLR2A	chr4:107236489-107238398	H1-hESC	embryonic stem cell:	n/a	n/a
48	POLR2A	chr4:107236557-107238586	K562	blood:	n/a	n/a
49	POLR2A	chr4:107236506-107238173	GM18526	blood:	n/a	n/a
50	POLR2A	chr4:107236595-107237577	GM12892	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:107226289..107231817-chr4:107234990..107238909,9	MCF-7	breast:
2	chr4:100869528..100871186-chr4:107235611..107237116,2	K562	blood:
3	chr4:107217698..107220197-chr4:107235297..107237150,2	MCF-7	breast:

No data

Variant related genes	Relation type
AIMP1	TF binding region
TBCK	TF binding region
ENSG00000245322	Chromatin interaction
ENSG00000145348	Chromatin interaction

Extended variants
information (count: 213 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:211)

rs_ID	r²[population]
rs10016884	0.95[CEU][hapmap]
rs10030019	0.93[ASN][1000 genomes]
rs10084928	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.93[ASN][1000 genomes]
rs10433894	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10516532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10516533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10516534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11097912	0.93[ASN][1000 genomes]
rs11097914	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11097916	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11097917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11097919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11097924	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11097925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11097927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11097928	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11097929	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11930970	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11940160	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11947335	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12499891	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12500295	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12500775	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12501801	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12502764	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12503753	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12504704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12504721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12506062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12506658	0.93[ASN][1000 genomes]
rs12507429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12507874	0.83[ASN][1000 genomes]
rs12508432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12508552	0.93[ASN][1000 genomes]
rs12509366	0.93[ASN][1000 genomes]
rs12509640	0.84[ASN][1000 genomes]
rs12509865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12510058	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12511305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12512683	0.93[ASN][1000 genomes]
rs12512877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12512903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12512966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12639869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12641015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12641037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12642059	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12642227	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12642454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12642900	0.93[ASN][1000 genomes]
rs12643397	0.93[ASN][1000 genomes]
rs12644259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12644596	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645255	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12645271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12645490	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12645698	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12645743	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12646263	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12646485	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12647078	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12648091	0.88[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12649709	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12651360	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13534	0.97[ASN][1000 genomes]
rs17036613	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17273093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17273445	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17274017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17274248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17275217	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17333287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17333732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17333879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17333899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1988695	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2290607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28391259	0.93[ASN][1000 genomes]
rs28507027	0.93[ASN][1000 genomes]
rs28765420	0.90[ASN][1000 genomes]
rs28787305	0.93[ASN][1000 genomes]
rs28814088	0.86[ASN][1000 genomes]
rs28822186	0.93[ASN][1000 genomes]
rs28866820	0.93[ASN][1000 genomes]
rs28868894	0.93[ASN][1000 genomes]
rs28875879	0.93[ASN][1000 genomes]
rs28897193	0.93[ASN][1000 genomes]
rs34193646	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34899289	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34961213	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35518913	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3737497	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3737498	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3762945	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3762946	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3775090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3792718	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3805405	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3805407	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3805409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3805410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3805411	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4323181	0.93[ASN][1000 genomes]
rs4337798	0.93[ASN][1000 genomes]
rs4337799	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4339284	0.93[ASN][1000 genomes]
rs4422480	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4429790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4458525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4466113	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4481295	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4521418	0.91[ASN][1000 genomes]
rs4607300	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4645291	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55634475	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55710349	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55726133	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55753411	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55833794	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56009469	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56135499	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56231393	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56260521	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56329826	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56333662	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56341229	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56775039	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56833325	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57246774	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59228887	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59784613	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61256759	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61544154	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62321365	0.90[ASN][1000 genomes]
rs6533240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6533243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6533245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6533246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6810877	0.90[ASN][1000 genomes]
rs6814166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6815014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6816614	0.93[ASN][1000 genomes]
rs6816698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6818197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6818626	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6819224	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6819742	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6822692	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6824682	0.93[ASN][1000 genomes]
rs6827816	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6828660	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6829795	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[ASN][1000 genomes]
rs6831032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6831665	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6835216	0.93[ASN][1000 genomes]
rs6838283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6843870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6844324	0.93[ASN][1000 genomes]
rs6846579	0.93[ASN][1000 genomes]
rs6849341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6856408	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6858391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72489522	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72677306	0.93[ASN][1000 genomes]
rs72876575	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72876590	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72876592	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72876594	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72878537	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72893620	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7340989	0.90[ASN][1000 genomes]
rs73839422	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73839455	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73839456	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7654865	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7655054	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7657975	0.93[ASN][1000 genomes]
rs7658701	0.93[ASN][1000 genomes]
rs7661499	0.85[ASN][1000 genomes]
rs7661565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7662219	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7662291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7662395	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7662592	0.93[ASN][1000 genomes]
rs7662806	0.93[ASN][1000 genomes]
rs7662836	0.93[ASN][1000 genomes]
rs7664032	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7664188	0.93[ASN][1000 genomes]
rs7665946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7667719	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7668477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7669087	0.93[ASN][1000 genomes]
rs7669212	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7671145	0.90[ASN][1000 genomes]
rs7673949	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7674381	0.82[ASN][1000 genomes]
rs7674460	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7674466	0.91[ASN][1000 genomes]
rs7674796	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7674931	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7678229	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7678749	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7678943	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7688008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7688411	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7696662	0.83[AMR][1000 genomes]
rs7697996	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7698386	0.91[ASN][1000 genomes]
rs7699768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9684658	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9685018	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1819960	chr4:107216320-107246136	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs3762947	MGC16169	Cis_1M	lymphoblastoid	RTeQTL
rs3762947	MGC16169	cis	multi-tissue	Pritchard
rs3762947	TBCK	cis	parietal	SCAN
rs3762947	TBCK	cis	lymphoblastoid	seeQTL
rs3762947	TBCK	cis	cerebellum	SCAN
rs3762947	SCYE1	cis	multi-tissue	Pritchard
rs3762947	SCYE1	Cis_1M	lymphoblastoid	RTeQTL
rs3762947	AIMP1	cis	lymphoblastoid	seeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107215800-107236800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:107235200-107239000	Active TSS	GM12878-XiMat	blood
3	chr4:107235200-107239000	Active TSS	K562	blood
4	chr4:107235400-107238800	Active TSS	NHLF	lung
5	chr4:107235600-107238400	Active TSS	Hela-S3	cervix
6	chr4:107235600-107239400	Active TSS	A549	lung
7	chr4:107235800-107237000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:107235800-107238800	Active TSS	Fetal Intestine Large	intestine
9	chr4:107236000-107236800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:107236000-107236800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:107236000-107236800	Flanking Active TSS	Osteobl	bone
12	chr4:107236000-107237000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:107236000-107237000	Flanking Active TSS	Duodenum Mucosa	Duodenum
14	chr4:107236000-107237200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:107236000-107238200	Active TSS	Fetal Brain Female	brain
16	chr4:107236000-107238200	Active TSS	HMEC	breast
17	chr4:107236000-107238600	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr4:107236000-107238600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:107236000-107238600	Active TSS	HSMM	muscle
20	chr4:107236200-107236800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:107236200-107236800	Flanking Active TSS	Primary T cells from cord blood	blood
22	chr4:107236200-107236800	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr4:107236200-107236800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
24	chr4:107236200-107236800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr4:107236200-107236800	Flanking Active TSS	Fetal Brain Male	brain
26	chr4:107236200-107236800	Flanking Active TSS	Rectal Smooth Muscle	rectum
27	chr4:107236200-107236800	Flanking Active TSS	HUVEC	blood vessel
28	chr4:107236200-107237000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr4:107236200-107237000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
30	chr4:107236200-107237000	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr4:107236200-107237000	Flanking Active TSS	Liver	Liver
32	chr4:107236200-107237000	Flanking Active TSS	Brain Cingulate Gyrus	brain
33	chr4:107236200-107237000	Flanking Active TSS	Fetal Muscle Leg	muscle
34	chr4:107236200-107237000	Active TSS	Right Atrium	heart
35	chr4:107236200-107237000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr4:107236200-107238200	Active TSS	Brain Anterior Caudate	brain
37	chr4:107236200-107238400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr4:107236200-107238400	Active TSS	HUES64 Cell Line	embryonic stem cell
39	chr4:107236200-107238400	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr4:107236200-107238400	Active TSS	Right Ventricle	heart
41	chr4:107236200-107238400	Active TSS	NHEK	skin
42	chr4:107236200-107238600	Active TSS	H9 Cell Line	embryonic stem cell
43	chr4:107236200-107238600	Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr4:107236200-107238600	Active TSS	iPS-15b Cell Line	embryonic stem cell
45	chr4:107236200-107238600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
46	chr4:107236200-107238600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr4:107236200-107238800	Active TSS	H1 Cell Line	embryonic stem cell
48	chr4:107236200-107238800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr4:107236200-107239000	Active TSS	ES-I3 Cell Line	embryonic stem cell
50	chr4:107236200-107239000	Active TSS	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

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