The 2.0 version of rSNPBase

Variant report

Variant rs10402479
Chromosome Location chr19:45621728-45621729
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:45606600-45623400 Weak transcription H9 Cell Line embryonic stem cell
2 chr19:45606600-45624800 Weak transcription NHEK skin
3 chr19:45606800-45634000 Weak transcription iPS-20b Cell Line embryonic stem cell
4 chr19:45607200-45625600 Weak transcription NHLF lung
5 chr19:45607600-45626600 Weak transcription Fetal Brain Male brain
6 chr19:45608000-45639400 Weak transcription HUES64 Cell Line embryonic stem cell
7 chr19:45608400-45629200 Weak transcription HUES48 Cell Line embryonic stem cell
8 chr19:45610400-45644400 Weak transcription Aorta Aorta
9 chr19:45613200-45623600 Weak transcription Ovary ovary
10 chr19:45613400-45621800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
11 chr19:45614200-45623000 Enhancers Stomach Mucosa stomach
12 chr19:45615600-45629800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr19:45616000-45622000 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
14 chr19:45616000-45623200 Enhancers Pancreas Pancrea
15 chr19:45616400-45623400 Enhancers Fetal Muscle Leg muscle
16 chr19:45617000-45625400 Enhancers Fetal Muscle Trunk muscle
17 chr19:45617000-45651600 Weak transcription Fetal Kidney kidney
18 chr19:45617200-45622000 Enhancers Fetal Intestine Large intestine
19 chr19:45617200-45627800 Enhancers Fetal Thymus thymus
20 chr19:45617400-45633200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
21 chr19:45617800-45640000 Weak transcription Fetal Lung lung
22 chr19:45618400-45622200 Enhancers Right Ventricle heart
23 chr19:45618600-45622800 Enhancers Primary T killer memory cells from peripheral blood blood
24 chr19:45618600-45623200 Enhancers Primary Natural Killer cells fromperipheralblood blood
25 chr19:45618600-45625800 Enhancers Primary T helper cells fromperipheralblood blood
26 chr19:45618800-45639600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr19:45618800-45639600 Weak transcription Brain Substantia Nigra brain
28 chr19:45619000-45622400 Enhancers Fetal Adrenal Gland Adrenal Gland
29 chr19:45619200-45622000 Enhancers K562 blood
30 chr19:45619200-45623000 Enhancers Primary mononuclear cells fromperipheralblood Blood
31 chr19:45619200-45623200 Enhancers Primary T killer naive cells fromperipheralblood blood
32 chr19:45619200-45625800 Enhancers Primary B cells from peripheral blood blood
33 chr19:45619400-45622200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr19:45619400-45622200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
35 chr19:45619400-45622600 Enhancers Colonic Mucosa Colon
36 chr19:45619400-45623000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
37 chr19:45619400-45623200 Enhancers Primary T helper 17 cells PMA-I stimulated --
38 chr19:45619400-45625600 Enhancers Primary B cells from cord blood blood
39 chr19:45619600-45621800 Enhancers Primary neutrophils fromperipheralblood blood
40 chr19:45619600-45622200 Enhancers Breast Myoepithelial Primary Cells Breast
41 chr19:45619600-45622400 Enhancers Cortex derived primary cultured neurospheres brain
42 chr19:45619600-45623000 Enhancers Primary T helper naive cells from peripheral blood blood
43 chr19:45619600-45623200 Enhancers Placenta Amnion Placenta Amnion
44 chr19:45619600-45623600 Enhancers Spleen Spleen
45 chr19:45619800-45623400 Enhancers Rectal Mucosa Donor 29 rectum
46 chr19:45619800-45626200 Enhancers Primary hematopoietic stem cells blood
47 chr19:45620000-45622000 Enhancers Esophagus oesophagus
48 chr19:45620000-45622200 Enhancers Gastric stomach
49 chr19:45620000-45623000 Enhancers Skeletal Muscle Male skeletal muscle
50 chr19:45620000-45623000 Enhancers Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015