The 2.0 version of rSNPBase

Variant report

Variant rs2060252
Chromosome Location chr19:45623346-45623347
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:45606600-45623400 Weak transcription H9 Cell Line embryonic stem cell
2 chr19:45606600-45624800 Weak transcription NHEK skin
3 chr19:45606800-45634000 Weak transcription iPS-20b Cell Line embryonic stem cell
4 chr19:45607200-45625600 Weak transcription NHLF lung
5 chr19:45607600-45626600 Weak transcription Fetal Brain Male brain
6 chr19:45608000-45639400 Weak transcription HUES64 Cell Line embryonic stem cell
7 chr19:45608400-45629200 Weak transcription HUES48 Cell Line embryonic stem cell
8 chr19:45610400-45644400 Weak transcription Aorta Aorta
9 chr19:45613200-45623600 Weak transcription Ovary ovary
10 chr19:45615600-45629800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
11 chr19:45616400-45623400 Enhancers Fetal Muscle Leg muscle
12 chr19:45617000-45625400 Enhancers Fetal Muscle Trunk muscle
13 chr19:45617000-45651600 Weak transcription Fetal Kidney kidney
14 chr19:45617200-45627800 Enhancers Fetal Thymus thymus
15 chr19:45617400-45633200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
16 chr19:45617800-45640000 Weak transcription Fetal Lung lung
17 chr19:45618600-45625800 Enhancers Primary T helper cells fromperipheralblood blood
18 chr19:45618800-45639600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr19:45618800-45639600 Weak transcription Brain Substantia Nigra brain
20 chr19:45619200-45625800 Enhancers Primary B cells from peripheral blood blood
21 chr19:45619400-45625600 Enhancers Primary B cells from cord blood blood
22 chr19:45619600-45623600 Enhancers Spleen Spleen
23 chr19:45619800-45623400 Enhancers Rectal Mucosa Donor 29 rectum
24 chr19:45619800-45626200 Enhancers Primary hematopoietic stem cells blood
25 chr19:45620000-45633400 Weak transcription iPS-15b Cell Line embryonic stem cell
26 chr19:45620200-45624600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr19:45620600-45627800 Genic enhancers Fetal Intestine Small intestine
28 chr19:45620800-45624200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr19:45620800-45643800 Weak transcription Primary T regulatory cells fromperipheralblood blood
30 chr19:45621000-45624400 Weak transcription Placenta Placenta
31 chr19:45621000-45629400 Weak transcription HUES6 Cell Line embryonic stem cell
32 chr19:45621000-45634000 Weak transcription Muscle Satellite Cultured Cells --
33 chr19:45621000-45634000 Weak transcription HSMMtube muscle
34 chr19:45621200-45624200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
35 chr19:45621200-45624600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr19:45621200-45625200 Weak transcription HMEC breast
37 chr19:45621200-45629200 Weak transcription H1 Cell Line embryonic stem cell
38 chr19:45621200-45629600 Weak transcription HepG2 liver
39 chr19:45621200-45633800 Weak transcription Osteobl bone
40 chr19:45621200-45639800 Weak transcription Rectal Smooth Muscle rectum
41 chr19:45621200-45644000 Weak transcription Primary monocytes fromperipheralblood blood
42 chr19:45621400-45624200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr19:45621400-45625200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr19:45621400-45629200 Weak transcription A549 lung
45 chr19:45621400-45633400 Weak transcription Dnd41 blood
46 chr19:45621400-45635000 Weak transcription Stomach Smooth Muscle stomach
47 chr19:45621600-45629200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr19:45621600-45629200 Weak transcription Brain Anterior Caudate brain
49 chr19:45621600-45643800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr19:45621800-45624400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell

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Last update: Aug 31, 2015