The 2.0 version of rSNPBase

Variant report

Variant rs12459402
Chromosome Location chr19:45627456-45627457
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:45606800-45634000 Weak transcription iPS-20b Cell Line embryonic stem cell
2 chr19:45608000-45639400 Weak transcription HUES64 Cell Line embryonic stem cell
3 chr19:45608400-45629200 Weak transcription HUES48 Cell Line embryonic stem cell
4 chr19:45610400-45644400 Weak transcription Aorta Aorta
5 chr19:45615600-45629800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr19:45617000-45651600 Weak transcription Fetal Kidney kidney
7 chr19:45617200-45627800 Enhancers Fetal Thymus thymus
8 chr19:45617400-45633200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr19:45617800-45640000 Weak transcription Fetal Lung lung
10 chr19:45618800-45639600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr19:45618800-45639600 Weak transcription Brain Substantia Nigra brain
12 chr19:45620000-45633400 Weak transcription iPS-15b Cell Line embryonic stem cell
13 chr19:45620600-45627800 Genic enhancers Fetal Intestine Small intestine
14 chr19:45620800-45643800 Weak transcription Primary T regulatory cells fromperipheralblood blood
15 chr19:45621000-45629400 Weak transcription HUES6 Cell Line embryonic stem cell
16 chr19:45621000-45634000 Weak transcription Muscle Satellite Cultured Cells --
17 chr19:45621000-45634000 Weak transcription HSMMtube muscle
18 chr19:45621200-45629200 Weak transcription H1 Cell Line embryonic stem cell
19 chr19:45621200-45629600 Weak transcription HepG2 liver
20 chr19:45621200-45633800 Weak transcription Osteobl bone
21 chr19:45621200-45639800 Weak transcription Rectal Smooth Muscle rectum
22 chr19:45621200-45644000 Weak transcription Primary monocytes fromperipheralblood blood
23 chr19:45621400-45629200 Weak transcription A549 lung
24 chr19:45621400-45633400 Weak transcription Dnd41 blood
25 chr19:45621400-45635000 Weak transcription Stomach Smooth Muscle stomach
26 chr19:45621600-45629200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr19:45621600-45629200 Weak transcription Brain Anterior Caudate brain
28 chr19:45621600-45643800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr19:45621800-45629200 Weak transcription Small Intestine intestine
30 chr19:45621800-45639800 Weak transcription Colon Smooth Muscle Colon
31 chr19:45622000-45629000 Weak transcription Brain Hippocampus Middle brain
32 chr19:45622000-45629000 Weak transcription K562 blood
33 chr19:45622000-45639200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
34 chr19:45622200-45629200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
35 chr19:45622200-45629200 Weak transcription Brain Angular Gyrus brain
36 chr19:45622200-45629200 Weak transcription Right Atrium heart
37 chr19:45622200-45633600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr19:45622200-45639600 Weak transcription Fetal Brain Female brain
39 chr19:45622800-45629000 Weak transcription Primary T killer memory cells from peripheral blood blood
40 chr19:45623000-45633600 Weak transcription HSMM muscle
41 chr19:45623200-45628000 Enhancers Stomach Mucosa stomach
42 chr19:45623200-45629000 Weak transcription Pancreas Pancrea
43 chr19:45623800-45627600 Enhancers Fetal Muscle Leg muscle
44 chr19:45624200-45628000 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
45 chr19:45624200-45628000 Strong transcription Fetal Stomach stomach
46 chr19:45624400-45627800 Genic enhancers Foreskin Melanocyte Primary Cells skin01 Skin
47 chr19:45624400-45628000 Enhancers Esophagus oesophagus
48 chr19:45624400-45628200 Enhancers Placenta Amnion Placenta Amnion
49 chr19:45624400-45629600 Enhancers Placenta Placenta
50 chr19:45624600-45627600 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015