Variant report

Variant rs17642665
Chromosome Location chr19:45594504-45594505
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:45583600-45594600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr19:45583600-45595200 Weak transcription Small Intestine intestine
3 chr19:45585800-45594600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr19:45587800-45594800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr19:45590600-45594800 Strong transcription Dnd41 blood
6 chr19:45592200-45594600 Weak transcription Primary T cells from cord blood blood
7 chr19:45593200-45595000 ZNF genes & repeats GM12878-XiMat blood
8 chr19:45593200-45595400 Strong transcription HepG2 liver
9 chr19:45593400-45594600 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
10 chr19:45593400-45594600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
11 chr19:45593400-45594600 Transcr. at gene 5' and 3' Duodenum Mucosa Duodenum
12 chr19:45593600-45594600 Genic enhancers Primary T cells fromperipheralblood blood
13 chr19:45593800-45594600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr19:45593800-45594600 Enhancers Primary T helper naive cells from peripheral blood blood
15 chr19:45593800-45594600 Enhancers Lung lung
16 chr19:45593800-45594800 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr19:45594000-45594600 Active TSS iPS-15b Cell Line embryonic stem cell
18 chr19:45594000-45594600 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
19 chr19:45594000-45594600 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
20 chr19:45594000-45594600 Transcr. at gene 5' and 3' Foreskin Melanocyte Primary Cells skin03 Skin
21 chr19:45594000-45594600 Flanking Active TSS Brain Inferior Temporal Lobe brain
22 chr19:45594000-45594600 Flanking Active TSS Duodenum Smooth Muscle Duodenum
23 chr19:45594000-45594800 Flanking Active TSS Brain Hippocampus Middle brain
24 chr19:45594000-45594800 Flanking Active TSS Rectal Mucosa Donor 29 rectum
25 chr19:45594000-45594800 Flanking Active TSS Rectal Mucosa Donor 31 rectum
26 chr19:45594000-45594800 Flanking Active TSS Stomach Smooth Muscle stomach
27 chr19:45594000-45595000 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
28 chr19:45594000-45598200 Active TSS Pancreatic Islets Pancreatic Islet
29 chr19:45594200-45594600 Transcr. at gene 5' and 3' H9 Cell Line embryonic stem cell
30 chr19:45594200-45594600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr19:45594200-45594600 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr19:45594200-45594600 Enhancers Primary monocytes fromperipheralblood blood
33 chr19:45594200-45594600 Enhancers Primary B cells from cord blood blood
34 chr19:45594200-45594600 Genic enhancers Primary B cells from peripheral blood blood
35 chr19:45594200-45594600 Weak transcription Primary T regulatory cells fromperipheralblood blood
36 chr19:45594200-45594600 Flanking Active TSS Brain Germinal Matrix brain
37 chr19:45594200-45594600 Flanking Active TSS Colon Smooth Muscle Colon
38 chr19:45594200-45594600 Flanking Active TSS Esophagus oesophagus
39 chr19:45594200-45594600 Flanking Active TSS Fetal Brain Female brain
40 chr19:45594200-45594600 Flanking Active TSS Fetal Heart heart
41 chr19:45594200-45594600 Flanking Active TSS Fetal Lung lung
42 chr19:45594200-45594600 Flanking Active TSS Pancreas Pancrea
43 chr19:45594200-45594600 Flanking Active TSS Rectal Smooth Muscle rectum
44 chr19:45594200-45594600 Flanking Active TSS HMEC breast
45 chr19:45594200-45594600 Flanking Active TSS NHDF-Ad bronchial
46 chr19:45594200-45594600 Transcr. at gene 5' and 3' NHEK skin
47 chr19:45594200-45594800 Flanking Active TSS H1 Cell Line embryonic stem cell
48 chr19:45594200-45594800 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
49 chr19:45594200-45594800 Flanking Active TSS ES-UCSF4 Cell Line embryonic stem cell
50 chr19:45594200-45594800 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow

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