The 2.0 version of rSNPBase

Variant report

Variant rs58260098
Chromosome Location chr19:45590605-45590606
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:45583600-45593800 Weak transcription Fetal Kidney kidney
2 chr19:45583600-45594400 Weak transcription Aorta Aorta
3 chr19:45583600-45594600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr19:45583600-45595200 Weak transcription Small Intestine intestine
5 chr19:45583800-45593400 Weak transcription Pancreas Pancrea
6 chr19:45583800-45593600 Weak transcription ES-WA7 Cell Line embryonic stem cell
7 chr19:45583800-45594200 Weak transcription Psoas Muscle Psoas
8 chr19:45583800-45594400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr19:45584000-45594400 Weak transcription Hela-S3 cervix
10 chr19:45584200-45594200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
11 chr19:45584200-45594200 Weak transcription NH-A brain
12 chr19:45584400-45591400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
13 chr19:45584400-45593000 Strong transcription Fetal Intestine Small intestine
14 chr19:45584400-45593200 Weak transcription Colonic Mucosa Colon
15 chr19:45584400-45593600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr19:45584400-45593800 Weak transcription Fetal Heart heart
17 chr19:45584400-45593800 Strong transcription Fetal Muscle Leg muscle
18 chr19:45584400-45593800 Strong transcription Fetal Stomach stomach
19 chr19:45584400-45594000 Weak transcription Stomach Mucosa stomach
20 chr19:45584400-45594200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr19:45584600-45592400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr19:45584800-45593800 Strong transcription Fetal Adrenal Gland Adrenal Gland
23 chr19:45584800-45594000 Strong transcription Fetal Muscle Trunk muscle
24 chr19:45585600-45593200 Weak transcription Ovary ovary
25 chr19:45585600-45594200 Weak transcription Primary B cells from cord blood blood
26 chr19:45585800-45591600 Weak transcription Muscle Satellite Cultured Cells --
27 chr19:45585800-45591600 Weak transcription Brain Angular Gyrus brain
28 chr19:45585800-45593200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr19:45585800-45593200 Weak transcription Primary neutrophils fromperipheralblood blood
30 chr19:45585800-45593200 Weak transcription Brain Germinal Matrix brain
31 chr19:45585800-45593200 Weak transcription HSMMtube muscle
32 chr19:45585800-45593400 Weak transcription Fetal Lung lung
33 chr19:45585800-45593400 Weak transcription Placenta Amnion Placenta Amnion
34 chr19:45585800-45593400 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr19:45585800-45594000 Weak transcription Brain Inferior Temporal Lobe brain
36 chr19:45585800-45594000 Weak transcription Colon Smooth Muscle Colon
37 chr19:45585800-45594200 Weak transcription Esophagus oesophagus
38 chr19:45585800-45594600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
39 chr19:45586000-45590800 Weak transcription Primary B cells from peripheral blood blood
40 chr19:45586000-45591000 Weak transcription Primary T regulatory cells fromperipheralblood blood
41 chr19:45586000-45591400 Weak transcription Primary hematopoietic stem cells blood
42 chr19:45586000-45591600 Weak transcription Brain Hippocampus Middle brain
43 chr19:45586000-45591600 Weak transcription Left Ventricle heart
44 chr19:45586000-45591600 Weak transcription HMEC breast
45 chr19:45586000-45593000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
46 chr19:45586000-45593200 Weak transcription Brain Cingulate Gyrus brain
47 chr19:45586000-45593200 Weak transcription HSMM muscle
48 chr19:45586000-45593400 Weak transcription Spleen Spleen
49 chr19:45586000-45594200 Weak transcription Brain Substantia Nigra brain
50 chr19:45586200-45591400 Weak transcription Osteobl bone

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Last update: Aug 31, 2015