The 2.0 version of rSNPBase

Variant report

Variant rs10421085
Chromosome Location chr19:45622622-45622623
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:45606600-45623400 Weak transcription H9 Cell Line embryonic stem cell
2 chr19:45606600-45624800 Weak transcription NHEK skin
3 chr19:45606800-45634000 Weak transcription iPS-20b Cell Line embryonic stem cell
4 chr19:45607200-45625600 Weak transcription NHLF lung
5 chr19:45607600-45626600 Weak transcription Fetal Brain Male brain
6 chr19:45608000-45639400 Weak transcription HUES64 Cell Line embryonic stem cell
7 chr19:45608400-45629200 Weak transcription HUES48 Cell Line embryonic stem cell
8 chr19:45610400-45644400 Weak transcription Aorta Aorta
9 chr19:45613200-45623600 Weak transcription Ovary ovary
10 chr19:45614200-45623000 Enhancers Stomach Mucosa stomach
11 chr19:45615600-45629800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
12 chr19:45616000-45623200 Enhancers Pancreas Pancrea
13 chr19:45616400-45623400 Enhancers Fetal Muscle Leg muscle
14 chr19:45617000-45625400 Enhancers Fetal Muscle Trunk muscle
15 chr19:45617000-45651600 Weak transcription Fetal Kidney kidney
16 chr19:45617200-45627800 Enhancers Fetal Thymus thymus
17 chr19:45617400-45633200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr19:45617800-45640000 Weak transcription Fetal Lung lung
19 chr19:45618600-45622800 Enhancers Primary T killer memory cells from peripheral blood blood
20 chr19:45618600-45623200 Enhancers Primary Natural Killer cells fromperipheralblood blood
21 chr19:45618600-45625800 Enhancers Primary T helper cells fromperipheralblood blood
22 chr19:45618800-45639600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr19:45618800-45639600 Weak transcription Brain Substantia Nigra brain
24 chr19:45619200-45623000 Enhancers Primary mononuclear cells fromperipheralblood Blood
25 chr19:45619200-45623200 Enhancers Primary T killer naive cells fromperipheralblood blood
26 chr19:45619200-45625800 Enhancers Primary B cells from peripheral blood blood
27 chr19:45619400-45623000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
28 chr19:45619400-45623200 Enhancers Primary T helper 17 cells PMA-I stimulated --
29 chr19:45619400-45625600 Enhancers Primary B cells from cord blood blood
30 chr19:45619600-45623000 Enhancers Primary T helper naive cells from peripheral blood blood
31 chr19:45619600-45623200 Enhancers Placenta Amnion Placenta Amnion
32 chr19:45619600-45623600 Enhancers Spleen Spleen
33 chr19:45619800-45623400 Enhancers Rectal Mucosa Donor 29 rectum
34 chr19:45619800-45626200 Enhancers Primary hematopoietic stem cells blood
35 chr19:45620000-45623000 Enhancers Skeletal Muscle Male skeletal muscle
36 chr19:45620000-45623000 Enhancers Skeletal Muscle Female skeletal muscle
37 chr19:45620000-45623000 Enhancers HSMM muscle
38 chr19:45620000-45633400 Weak transcription iPS-15b Cell Line embryonic stem cell
39 chr19:45620200-45624600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr19:45620600-45622800 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
41 chr19:45620600-45623000 Enhancers Psoas Muscle Psoas
42 chr19:45620600-45623200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
43 chr19:45620600-45623200 Enhancers Sigmoid Colon Sigmoid Colon
44 chr19:45620600-45627800 Genic enhancers Fetal Intestine Small intestine
45 chr19:45620800-45623200 Enhancers Primary T cells fromperipheralblood blood
46 chr19:45620800-45624200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr19:45620800-45643800 Weak transcription Primary T regulatory cells fromperipheralblood blood
48 chr19:45621000-45623200 Enhancers Primary T cells from cord blood blood
49 chr19:45621000-45623200 Enhancers Primary T helper cells PMA-I stimulated --
50 chr19:45621000-45623200 Enhancers Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015