The 2.0 version of rSNPBase

Variant report

Variant rs10408366
Chromosome Location chr19:45601074-45601075
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:45597400-45601200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr19:45597400-45601600 Enhancers Primary Natural Killer cells fromperipheralblood blood
3 chr19:45597400-45602200 Enhancers Primary T helper 17 cells PMA-I stimulated --
4 chr19:45597400-45602800 Enhancers Primary T helper naive cells from peripheral blood blood
5 chr19:45597400-45603000 Enhancers Primary T killer naive cells fromperipheralblood blood
6 chr19:45597400-45603000 Enhancers Fetal Brain Male brain
7 chr19:45597400-45603200 Enhancers Left Ventricle heart
8 chr19:45597400-45604600 Enhancers Placenta Placenta
9 chr19:45597400-45609400 Enhancers Stomach Mucosa stomach
10 chr19:45597600-45601200 Enhancers Primary T killer memory cells from peripheral blood blood
11 chr19:45597600-45602000 Enhancers Primary T regulatory cells fromperipheralblood blood
12 chr19:45597600-45603000 Enhancers Primary T cells fromperipheralblood blood
13 chr19:45597600-45603000 Enhancers Lung lung
14 chr19:45597600-45606200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr19:45597600-45609200 Enhancers Pancreas Pancrea
16 chr19:45597800-45601200 Weak transcription iPS-15b Cell Line embryonic stem cell
17 chr19:45597800-45602000 Enhancers Primary T helper naive cells fromperipheralblood blood
18 chr19:45597800-45602600 Enhancers Primary T helper cells PMA-I stimulated --
19 chr19:45597800-45602800 Enhancers Primary T helper cells fromperipheralblood blood
20 chr19:45597800-45603000 Enhancers Cortex derived primary cultured neurospheres brain
21 chr19:45597800-45604000 Genic enhancers Fetal Muscle Leg muscle
22 chr19:45597800-45604200 Enhancers Psoas Muscle Psoas
23 chr19:45598000-45601200 Weak transcription H9 Cell Line embryonic stem cell
24 chr19:45598000-45604000 Enhancers Duodenum Smooth Muscle Duodenum
25 chr19:45598200-45601200 Enhancers Brain Cingulate Gyrus brain
26 chr19:45598200-45601400 Genic enhancers Fetal Adrenal Gland Adrenal Gland
27 chr19:45598200-45601400 Weak transcription Fetal Kidney kidney
28 chr19:45598200-45601800 Weak transcription iPS-18 Cell Line embryonic stem cell
29 chr19:45598200-45604400 Enhancers Gastric stomach
30 chr19:45598200-45606000 Weak transcription Primary neutrophils fromperipheralblood blood
31 chr19:45598400-45601200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr19:45598400-45601200 Enhancers Brain Hippocampus Middle brain
33 chr19:45598400-45601200 Weak transcription HUVEC blood vessel
34 chr19:45598400-45601200 Genic enhancers NHLF lung
35 chr19:45598400-45601400 Enhancers Adipose Nuclei Adipose
36 chr19:45598400-45601400 Enhancers NHDF-Ad bronchial
37 chr19:45598400-45601600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
38 chr19:45598400-45602200 Enhancers Colon Smooth Muscle Colon
39 chr19:45598400-45602400 Weak transcription Monocytes-CD14+_RO01746 blood
40 chr19:45598400-45604000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr19:45598400-45605600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr19:45598400-45606000 Weak transcription Primary monocytes fromperipheralblood blood
43 chr19:45598400-45606000 Weak transcription Primary hematopoietic stem cells blood
44 chr19:45598400-45606000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr19:45598400-45606600 Genic enhancers Fetal Intestine Small intestine
46 chr19:45598600-45602800 Enhancers Liver Liver
47 chr19:45599000-45601400 Enhancers Brain Anterior Caudate brain
48 chr19:45599000-45601600 Enhancers Brain Substantia Nigra brain
49 chr19:45599000-45602600 Enhancers Ovary ovary
50 chr19:45599000-45603600 Genic enhancers Fetal Thymus thymus

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Last update: Aug 31, 2015