The 2.0 version of rSNPBase

Variant report

Variant rs10408462
Chromosome Location chr19:45623954-45623955
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:45606600-45624800 Weak transcription NHEK skin
2 chr19:45606800-45634000 Weak transcription iPS-20b Cell Line embryonic stem cell
3 chr19:45607200-45625600 Weak transcription NHLF lung
4 chr19:45607600-45626600 Weak transcription Fetal Brain Male brain
5 chr19:45608000-45639400 Weak transcription HUES64 Cell Line embryonic stem cell
6 chr19:45608400-45629200 Weak transcription HUES48 Cell Line embryonic stem cell
7 chr19:45610400-45644400 Weak transcription Aorta Aorta
8 chr19:45615600-45629800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr19:45617000-45625400 Enhancers Fetal Muscle Trunk muscle
10 chr19:45617000-45651600 Weak transcription Fetal Kidney kidney
11 chr19:45617200-45627800 Enhancers Fetal Thymus thymus
12 chr19:45617400-45633200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr19:45617800-45640000 Weak transcription Fetal Lung lung
14 chr19:45618600-45625800 Enhancers Primary T helper cells fromperipheralblood blood
15 chr19:45618800-45639600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr19:45618800-45639600 Weak transcription Brain Substantia Nigra brain
17 chr19:45619200-45625800 Enhancers Primary B cells from peripheral blood blood
18 chr19:45619400-45625600 Enhancers Primary B cells from cord blood blood
19 chr19:45619800-45626200 Enhancers Primary hematopoietic stem cells blood
20 chr19:45620000-45633400 Weak transcription iPS-15b Cell Line embryonic stem cell
21 chr19:45620200-45624600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr19:45620600-45627800 Genic enhancers Fetal Intestine Small intestine
23 chr19:45620800-45624200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr19:45620800-45643800 Weak transcription Primary T regulatory cells fromperipheralblood blood
25 chr19:45621000-45624400 Weak transcription Placenta Placenta
26 chr19:45621000-45629400 Weak transcription HUES6 Cell Line embryonic stem cell
27 chr19:45621000-45634000 Weak transcription Muscle Satellite Cultured Cells --
28 chr19:45621000-45634000 Weak transcription HSMMtube muscle
29 chr19:45621200-45624200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
30 chr19:45621200-45624600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr19:45621200-45625200 Weak transcription HMEC breast
32 chr19:45621200-45629200 Weak transcription H1 Cell Line embryonic stem cell
33 chr19:45621200-45629600 Weak transcription HepG2 liver
34 chr19:45621200-45633800 Weak transcription Osteobl bone
35 chr19:45621200-45639800 Weak transcription Rectal Smooth Muscle rectum
36 chr19:45621200-45644000 Weak transcription Primary monocytes fromperipheralblood blood
37 chr19:45621400-45624200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr19:45621400-45625200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
39 chr19:45621400-45629200 Weak transcription A549 lung
40 chr19:45621400-45633400 Weak transcription Dnd41 blood
41 chr19:45621400-45635000 Weak transcription Stomach Smooth Muscle stomach
42 chr19:45621600-45629200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
43 chr19:45621600-45629200 Weak transcription Brain Anterior Caudate brain
44 chr19:45621600-45643800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr19:45621800-45624400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
46 chr19:45621800-45629200 Weak transcription Small Intestine intestine
47 chr19:45621800-45639800 Weak transcription Colon Smooth Muscle Colon
48 chr19:45622000-45624000 Weak transcription Fetal Intestine Large intestine
49 chr19:45622000-45624600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
50 chr19:45622000-45625400 Weak transcription Brain Cingulate Gyrus brain

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015