The 2.0 version of rSNPBase

Variant report

Variant rs10417618
Chromosome Location chr19:45603936-45603937
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:45597400-45604600 Enhancers Placenta Placenta
2 chr19:45597400-45609400 Enhancers Stomach Mucosa stomach
3 chr19:45597600-45606200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr19:45597600-45609200 Enhancers Pancreas Pancrea
5 chr19:45597800-45604000 Genic enhancers Fetal Muscle Leg muscle
6 chr19:45597800-45604200 Enhancers Psoas Muscle Psoas
7 chr19:45598000-45604000 Enhancers Duodenum Smooth Muscle Duodenum
8 chr19:45598200-45604400 Enhancers Gastric stomach
9 chr19:45598200-45606000 Weak transcription Primary neutrophils fromperipheralblood blood
10 chr19:45598400-45604000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr19:45598400-45605600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr19:45598400-45606000 Weak transcription Primary monocytes fromperipheralblood blood
13 chr19:45598400-45606000 Weak transcription Primary hematopoietic stem cells blood
14 chr19:45598400-45606000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr19:45598400-45606600 Genic enhancers Fetal Intestine Small intestine
16 chr19:45599400-45605800 Weak transcription Primary B cells from peripheral blood blood
17 chr19:45599800-45605800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
18 chr19:45600000-45604000 Enhancers HMEC breast
19 chr19:45600000-45604400 Enhancers ES-I3 Cell Line embryonic stem cell
20 chr19:45600000-45606200 Enhancers Fetal Intestine Large intestine
21 chr19:45600000-45607800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
22 chr19:45600200-45605400 Enhancers Placenta Amnion Placenta Amnion
23 chr19:45600400-45604000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
24 chr19:45600400-45604400 Genic enhancers Fetal Stomach stomach
25 chr19:45600400-45605000 Weak transcription GM12878-XiMat blood
26 chr19:45600800-45607800 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr19:45601000-45604600 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
28 chr19:45601000-45604600 Flanking Active TSS Skeletal Muscle Male skeletal muscle
29 chr19:45601200-45604000 Enhancers HUVEC blood vessel
30 chr19:45601400-45604400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr19:45601400-45606200 Weak transcription Sigmoid Colon Sigmoid Colon
32 chr19:45601400-45608000 Enhancers Esophagus oesophagus
33 chr19:45601400-45608000 Enhancers Fetal Adrenal Gland Adrenal Gland
34 chr19:45601600-45605600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
35 chr19:45601600-45605800 Weak transcription H9 Cell Line embryonic stem cell
36 chr19:45601600-45605800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
37 chr19:45601600-45606400 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
38 chr19:45601800-45604800 Enhancers NH-A brain
39 chr19:45602000-45604200 Strong transcription Primary hematopoietic stem cells short term culture blood
40 chr19:45602000-45604400 Enhancers HSMM muscle
41 chr19:45602000-45605600 Weak transcription Primary T regulatory cells fromperipheralblood blood
42 chr19:45602000-45606200 Enhancers HUES6 Cell Line embryonic stem cell
43 chr19:45602000-45606200 Weak transcription Rectal Smooth Muscle rectum
44 chr19:45602000-45612200 Weak transcription Hela-S3 cervix
45 chr19:45602200-45604600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
46 chr19:45602200-45604600 Enhancers Muscle Satellite Cultured Cells --
47 chr19:45602200-45605200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
48 chr19:45602200-45605600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
49 chr19:45602200-45606400 Weak transcription Colon Smooth Muscle Colon
50 chr19:45602400-45604400 Strong transcription Primary mononuclear cells fromperipheralblood Blood

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015