Variant report

Variant	rs35626715
Chromosome Location	chr17:43502241-43502242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:43324524..43327061-chr17:43500908..43504321,4	MCF-7	breast:
2	chr17:43502180..43505047-chr17:43970966..43974065,3	MCF-7	breast:
3	chr17:43501715..43503974-chr17:43507657..43510348,3	MCF-7	breast:
4	chr17:43213295..43214838-chr17:43501278..43504057,2	MCF-7	breast:
5	chr17:43485567..43488047-chr17:43501616..43504138,2	MCF-7	breast:
6	chr17:43501401..43503182-chr17:43508338..43510884,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233483	Chromatin interaction
ENSG00000181513	Chromatin interaction
ENSG00000264589	Chromatin interaction
ENSG00000159314	Chromatin interaction
ENSG00000186868	Chromatin interaction
ENSG00000267278	Chromatin interaction

Extended variants
information (count: 162 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs11012	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12452273	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12939187	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12940792	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12942666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12942951	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12946723	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12946900	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12947718	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12949256	0.83[EUR][1000 genomes]
rs12950965	0.88[EUR][1000 genomes]
rs12952504	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12952764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17631303	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17631676	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1808189	0.89[EUR][1000 genomes]
rs1879581	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1879583	0.82[EUR][1000 genomes]
rs1879585	0.89[EUR][1000 genomes]
rs2028078	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2077606	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2090847	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2139890	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2960000	0.85[EUR][1000 genomes]
rs34018943	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34063617	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34104358	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34286926	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34363898	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34465449	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34792542	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34887474	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34915103	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35327136	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35389313	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35489312	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35519908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35884427	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36078910	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36114997	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3946526	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4763	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55642947	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55643511	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55648326	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55652155	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55663797	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55671319	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55703888	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55746869	0.89[EUR][1000 genomes]
rs55790407	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55793500	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55914643	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55925547	0.91[EUR][1000 genomes]
rs56005713	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56015792	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56020833	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56159231	0.89[EUR][1000 genomes]
rs56168933	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56192752	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56212100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56220387	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56236914	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56378631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62064597	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62064598	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62064600	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62064603	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62064637	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62064641	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62064643	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62064645	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62064646	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62064647	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62064649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62064651	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62064652	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62064653	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62064654	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62064655	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62064657	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62065374	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62065376	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62065377	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62065378	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62065379	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62065380	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62065385	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62065389	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62065391	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62065392	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62065399	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62065403	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62065404	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62065436	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62065437	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62065438	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62065441	0.83[EUR][1000 genomes]
rs62065442	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62065444	0.84[EUR][1000 genomes]
rs62065445	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62065447	0.85[EUR][1000 genomes]
rs62065448	0.85[EUR][1000 genomes]
rs62065449	0.85[EUR][1000 genomes]
rs71238846	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71373560	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71373572	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7209501	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7220206	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7222389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7222444	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73984391	0.96[EUR][1000 genomes]
rs8071011	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9730	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:48 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431632	chr17:43199763-43733983	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	210 gene(s)	inside rSNPs	diseases
2	nsv431633	chr17:43199763-43772540	Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	210 gene(s)	inside rSNPs	diseases
3	nsv431634	chr17:43346980-43659975	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv431636	chr17:43403005-43659881	Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	esv2754858	chr17:43403005-43666906	Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv431637	chr17:43403005-43716885	Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv428342	chr17:43443554-43651084	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	esv2757659	chr17:43457886-43733983	Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	esv2758691	chr17:43457886-43816023	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	esv2755280	chr17:43459697-43666906	Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
11	nsv908304	chr17:43467025-43524511	Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
12	nsv1065930	chr17:43467291-44151468	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
13	nsv431638	chr17:43470156-43693538	Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
14	esv2755741	chr17:43470760-43655688	Bivalent/Poised TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
15	nsv431639	chr17:43470760-43659355	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
16	esv2754089	chr17:43470760-43659881	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
17	esv34266	chr17:43470760-43659975	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
18	esv34577	chr17:43470760-43659975	Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
19	esv2752564	chr17:43470760-43659975	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
20	esv2753343	chr17:43470760-43659975	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
21	esv2753852	chr17:43470760-43659975	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
22	esv2754692	chr17:43470760-43659975	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
23	esv2754773	chr17:43470760-43659975	Strong transcription Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
24	esv2754821	chr17:43470760-43659975	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
25	esv2755261	chr17:43470760-43659975	Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
26	esv2755434	chr17:43470760-43659975	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
27	esv2755618	chr17:43470760-43659975	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
28	esv2756206	chr17:43470760-43659975	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
29	esv2756211	chr17:43470760-43659975	Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
30	esv2756238	chr17:43470760-43659975	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
31	esv2756640	chr17:43470760-43659975	Flanking Active TSS Genic enhancers Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
32	esv34307	chr17:43470760-43666906	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
33	esv2755466	chr17:43470760-43666906	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
34	esv2756448	chr17:43470760-43666906	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
35	nsv431640	chr17:43470760-43666906	Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
36	esv2753768	chr17:43470760-43734304	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
37	esv2754725	chr17:43470760-43741452	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
38	esv2752397	chr17:43485791-43659975	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
39	esv2753431	chr17:43485791-43659975	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
40	esv2755266	chr17:43485791-43659975	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
41	esv2755477	chr17:43485791-43659975	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
42	esv2755480	chr17:43485791-43659975	Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
43	esv2756392	chr17:43485791-43659975	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
44	nsv431641	chr17:43485791-43659975	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
45	esv35084	chr17:43485791-43666906	Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
46	esv2754833	chr17:43485791-43666906	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
47	nsv431643	chr17:43485791-43666906	Enhancers Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
48	nsv431642	chr17:43485791-43716885	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs35626715	LRRC37A4	Cis_1M	lymphoblastoid	RTeQTL
rs35626715	MAPK8IP1	trans	lymphoblastoid	RTeQTL
rs35626715	LRRC37A4	cis	multi-tissue	Pritchard
rs35626715	LOC644246	Cis_1M	lymphoblastoid	RTeQTL
rs35626715	ARHGAP27	Cis_1M	lymphoblastoid	RTeQTL
rs35626715	ARL17	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:43484400-43502600	Weak transcription	Fetal Lung	lung
2	chr17:43488800-43505400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr17:43489600-43505400	Weak transcription	Brain Hippocampus Middle	brain
4	chr17:43490200-43503000	Weak transcription	Adipose Nuclei	Adipose
5	chr17:43490200-43505600	Weak transcription	Thymus	Thymus
6	chr17:43493200-43503800	Weak transcription	Spleen	Spleen
7	chr17:43496600-43505800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr17:43497200-43502600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr17:43499800-43502600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr17:43500600-43503000	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr17:43500800-43503000	Active TSS	Duodenum Mucosa	Duodenum
12	chr17:43501000-43502400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr17:43501000-43503000	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr17:43501000-43503000	Active TSS	Rectal Smooth Muscle	rectum
15	chr17:43501000-43503600	Active TSS	Colonic Mucosa	Colon
16	chr17:43501200-43502400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr17:43501200-43502600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr17:43501200-43502600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr17:43501200-43503000	Active TSS	Fetal Intestine Large	intestine
20	chr17:43501200-43503000	Active TSS	Rectal Mucosa Donor 31	rectum
21	chr17:43501400-43502400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr17:43501400-43502600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr17:43501400-43502600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr17:43501400-43502800	Enhancers	Pancreas	Pancrea
25	chr17:43501400-43503000	Active TSS	Sigmoid Colon	Sigmoid Colon
26	chr17:43501400-43503400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr17:43501400-43504200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr17:43501600-43502400	Enhancers	HMEC	breast
29	chr17:43501600-43502600	Enhancers	Fetal Heart	heart
30	chr17:43501600-43502800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr17:43501600-43503000	Active TSS	Left Ventricle	heart
32	chr17:43501600-43503200	Active TSS	Right Atrium	heart
33	chr17:43501800-43502600	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr17:43501800-43502600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr17:43501800-43502600	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr17:43501800-43503000	Active TSS	Right Ventricle	heart
37	chr17:43501800-43503000	Active TSS	Small Intestine	intestine
38	chr17:43501800-43503200	Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chr17:43501800-43504000	Enhancers	Placenta Amnion	Placenta Amnion
40	chr17:43502000-43502400	Active TSS	HepG2	liver
41	chr17:43502000-43503200	Active TSS	Hela-S3	cervix
42	chr17:43502000-43503400	Active TSS	A549	lung
43	chr17:43502000-43503800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr17:43502200-43502400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
45	chr17:43502200-43502400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr17:43502200-43502400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr17:43502200-43502400	Flanking Active TSS	Esophagus	oesophagus
48	chr17:43502200-43502400	Active TSS	Fetal Intestine Small	intestine
49	chr17:43502200-43502400	Weak transcription	Lung	lung
50	chr17:43502200-43502600	Bivalent/Poised TSS	Fetal Stomach	stomach

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