The 2.0 version of rSNPBase

Variant report

Variant rs62065436
Chromosome Location chr17:43556652-43556653
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43510800-43567200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr17:43519600-43564600 Weak transcription HSMMtube muscle
3 chr17:43523000-43567200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
4 chr17:43523800-43560000 Weak transcription NHDF-Ad bronchial
5 chr17:43524400-43567000 Weak transcription Primary T killer memory cells from peripheral blood blood
6 chr17:43527600-43556800 Weak transcription Fetal Lung lung
7 chr17:43529000-43560000 Weak transcription Primary hematopoietic stem cells blood
8 chr17:43529000-43566600 Weak transcription Colon Smooth Muscle Colon
9 chr17:43534000-43559000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr17:43539800-43564800 Weak transcription HSMM muscle
11 chr17:43540200-43566600 Weak transcription Primary T killer naive cells fromperipheralblood blood
12 chr17:43540200-43567200 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr17:43540200-43567200 Weak transcription GM12878-XiMat blood
14 chr17:43546600-43559200 Weak transcription Ovary ovary
15 chr17:43546600-43565000 Weak transcription Brain Cingulate Gyrus brain
16 chr17:43546800-43560000 Weak transcription Stomach Mucosa stomach
17 chr17:43546800-43567200 Weak transcription Primary T helper naive cells from peripheral blood blood
18 chr17:43547200-43560200 Weak transcription HMEC breast
19 chr17:43547400-43560600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr17:43548200-43561800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
21 chr17:43548200-43567600 Weak transcription Small Intestine intestine
22 chr17:43548400-43566600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
23 chr17:43548400-43567400 Weak transcription Psoas Muscle Psoas
24 chr17:43550000-43557400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr17:43550200-43560000 Weak transcription HUES6 Cell Line embryonic stem cell
26 chr17:43550200-43564600 Weak transcription Primary B cells from cord blood blood
27 chr17:43550400-43560400 Weak transcription HUVEC blood vessel
28 chr17:43550400-43565000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
29 chr17:43552400-43556800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
30 chr17:43553000-43567200 Weak transcription Rectal Smooth Muscle rectum
31 chr17:43553200-43559800 Weak transcription Cortex derived primary cultured neurospheres brain
32 chr17:43553200-43560000 Weak transcription Colonic Mucosa Colon
33 chr17:43553400-43558800 Weak transcription Placenta Amnion Placenta Amnion
34 chr17:43553800-43567200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
35 chr17:43554000-43560000 Weak transcription Primary B cells from peripheral blood blood
36 chr17:43554000-43566600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
37 chr17:43554400-43561200 Weak transcription Skeletal Muscle Male skeletal muscle
38 chr17:43554600-43560000 Weak transcription Rectal Mucosa Donor 31 rectum
39 chr17:43554600-43564800 Weak transcription Osteobl bone
40 chr17:43554600-43565000 Weak transcription Brain Hippocampus Middle brain
41 chr17:43555200-43565000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr17:43555200-43567200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr17:43555400-43559600 Weak transcription Brain Germinal Matrix brain
44 chr17:43555400-43560000 Weak transcription Brain Anterior Caudate brain
45 chr17:43555400-43560000 Weak transcription Fetal Muscle Trunk muscle
46 chr17:43555400-43560000 Weak transcription Sigmoid Colon Sigmoid Colon
47 chr17:43555400-43560200 Weak transcription Fetal Adrenal Gland Adrenal Gland
48 chr17:43555400-43564000 Weak transcription Brain Inferior Temporal Lobe brain
49 chr17:43555400-43567000 Weak transcription Gastric stomach
50 chr17:43555600-43558000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015