The 2.0 version of rSNPBase

Variant report

Variant rs62064643
Chromosome Location chr17:43490853-43490854
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:64 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43482400-43501600 Weak transcription HMEC breast
2 chr17:43483200-43496000 Weak transcription Hela-S3 cervix
3 chr17:43484200-43492400 Weak transcription iPS-15b Cell Line embryonic stem cell
4 chr17:43484400-43502600 Weak transcription Fetal Lung lung
5 chr17:43484600-43502200 Weak transcription Breast Myoepithelial Primary Cells Breast
6 chr17:43487000-43493000 Weak transcription K562 blood
7 chr17:43487400-43496000 Weak transcription NHEK skin
8 chr17:43487400-43501400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr17:43487600-43491600 Enhancers Left Ventricle heart
10 chr17:43487600-43493400 Enhancers Stomach Mucosa stomach
11 chr17:43487600-43496400 Weak transcription Brain Cingulate Gyrus brain
12 chr17:43487800-43494200 Genic enhancers Fetal Intestine Small intestine
13 chr17:43488200-43492000 Enhancers Placenta Placenta
14 chr17:43488400-43491000 Enhancers Primary hematopoietic stem cells blood
15 chr17:43488400-43491200 Enhancers Primary Natural Killer cells fromperipheralblood blood
16 chr17:43488400-43493000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
17 chr17:43488400-43493000 Enhancers Primary B cells from peripheral blood blood
18 chr17:43488600-43491000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr17:43488600-43491800 Enhancers GM12878-XiMat blood
20 chr17:43488600-43493000 Enhancers Primary B cells from cord blood blood
21 chr17:43488600-43493200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr17:43488600-43496000 Weak transcription H1 Cell Line embryonic stem cell
23 chr17:43488600-43501400 Weak transcription HUES6 Cell Line embryonic stem cell
24 chr17:43488800-43505400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr17:43489000-43496000 Weak transcription Fetal Stomach stomach
26 chr17:43489200-43491000 Enhancers Liver Liver
27 chr17:43489200-43492800 Weak transcription Brain Anterior Caudate brain
28 chr17:43489600-43491800 Enhancers HepG2 liver
29 chr17:43489600-43492600 Weak transcription Placenta Amnion Placenta Amnion
30 chr17:43489600-43505400 Weak transcription Brain Hippocampus Middle brain
31 chr17:43489800-43491800 Enhancers Right Ventricle heart
32 chr17:43489800-43492800 Weak transcription ES-I3 Cell Line embryonic stem cell
33 chr17:43489800-43493400 Genic enhancers Primary hematopoietic stem cells short term culture blood
34 chr17:43489800-43494200 Enhancers Primary monocytes fromperipheralblood blood
35 chr17:43490000-43491000 Enhancers Skeletal Muscle Male skeletal muscle
36 chr17:43490000-43492400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr17:43490000-43492400 Enhancers Rectal Mucosa Donor 29 rectum
38 chr17:43490000-43492400 Enhancers Rectal Mucosa Donor 31 rectum
39 chr17:43490000-43492600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
40 chr17:43490000-43492800 Weak transcription A549 lung
41 chr17:43490000-43494000 Weak transcription Colon Smooth Muscle Colon
42 chr17:43490000-43496000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr17:43490000-43501400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr17:43490200-43491000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr17:43490200-43492400 Weak transcription Gastric stomach
46 chr17:43490200-43492600 Weak transcription Esophagus oesophagus
47 chr17:43490200-43492600 Enhancers Fetal Intestine Large intestine
48 chr17:43490200-43492600 Weak transcription Fetal Muscle Trunk muscle
49 chr17:43490200-43492600 Weak transcription Lung lung
50 chr17:43490200-43492600 Weak transcription Spleen Spleen

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Last update: Aug 31, 2015