The 2.0 version of rSNPBase

Variant report

Variant rs35327136
Chromosome Location chr17:43487574-43487575
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43475800-43490400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
2 chr17:43479400-43489600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr17:43482400-43501600 Weak transcription HMEC breast
4 chr17:43483200-43496000 Weak transcription Hela-S3 cervix
5 chr17:43483400-43488800 Weak transcription Psoas Muscle Psoas
6 chr17:43483800-43487600 Weak transcription ES-WA7 Cell Line embryonic stem cell
7 chr17:43483800-43488800 Flanking Active TSS Primary neutrophils fromperipheralblood blood
8 chr17:43484200-43492400 Weak transcription iPS-15b Cell Line embryonic stem cell
9 chr17:43484400-43488000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr17:43484400-43488600 Flanking Active TSS Primary B cells from cord blood blood
11 chr17:43484400-43502600 Weak transcription Fetal Lung lung
12 chr17:43484600-43487600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr17:43484600-43502200 Weak transcription Breast Myoepithelial Primary Cells Breast
14 chr17:43485200-43488600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr17:43485200-43490200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr17:43485400-43487800 Active TSS Brain Hippocampus Middle brain
17 chr17:43485600-43487600 Flanking Active TSS Primary T helper cells fromperipheralblood blood
18 chr17:43485600-43488400 Flanking Active TSS Primary hematopoietic stem cells blood
19 chr17:43485600-43488400 Flanking Active TSS Primary mononuclear cells fromperipheralblood Blood
20 chr17:43485800-43487800 Active TSS Brain Substantia Nigra brain
21 chr17:43485800-43488000 Active TSS Duodenum Smooth Muscle Duodenum
22 chr17:43485800-43488200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr17:43485800-43488400 Active TSS Rectal Smooth Muscle rectum
24 chr17:43486000-43488200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr17:43486000-43488600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr17:43486200-43488000 Transcr. at gene 5' and 3' Esophagus oesophagus
27 chr17:43486200-43488200 Flanking Active TSS Fetal Thymus thymus
28 chr17:43486200-43488600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr17:43486400-43487600 Active TSS Brain Anterior Caudate brain
30 chr17:43486400-43487800 Active TSS Skeletal Muscle Female skeletal muscle
31 chr17:43486400-43488200 Weak transcription HUES48 Cell Line embryonic stem cell
32 chr17:43486600-43487800 Flanking Active TSS Right Ventricle heart
33 chr17:43486600-43488200 Flanking Active TSS Placenta Placenta
34 chr17:43486600-43489800 Enhancers ES-I3 Cell Line embryonic stem cell
35 chr17:43486800-43487800 Weak transcription HUES6 Cell Line embryonic stem cell
36 chr17:43486800-43488000 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
37 chr17:43486800-43488000 Active TSS Liver Liver
38 chr17:43486800-43488200 Active TSS Primary T helper memory cells from peripheral blood 1 blood
39 chr17:43486800-43488600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
40 chr17:43486800-43489400 Weak transcription A549 lung
41 chr17:43487000-43487600 Transcr. at gene 5' and 3' Colonic Mucosa Colon
42 chr17:43487000-43487600 Active TSS Fetal Muscle Leg muscle
43 chr17:43487000-43487600 Active TSS Fetal Stomach stomach
44 chr17:43487000-43487600 Flanking Active TSS Left Ventricle heart
45 chr17:43487000-43487600 Active TSS Pancreas Pancrea
46 chr17:43487000-43487600 Active TSS Sigmoid Colon Sigmoid Colon
47 chr17:43487000-43487800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
48 chr17:43487000-43487800 Active TSS Colon Smooth Muscle Colon
49 chr17:43487000-43487800 Active TSS Skeletal Muscle Male skeletal muscle
50 chr17:43487000-43487800 Transcr. at gene 5' and 3' Dnd41 blood

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Last update: Aug 31, 2015