The 2.0 version of rSNPBase

Variant report

Variant rs1879581
Chromosome Location chr17:43545893-43545894
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43510200-43548200 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr17:43510800-43567200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr17:43515600-43549600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
4 chr17:43517000-43549800 Weak transcription Left Ventricle heart
5 chr17:43518000-43552600 Weak transcription Cortex derived primary cultured neurospheres brain
6 chr17:43518200-43548600 Weak transcription Fetal Kidney kidney
7 chr17:43518200-43552200 Weak transcription Rectal Smooth Muscle rectum
8 chr17:43518400-43549600 Weak transcription HUES6 Cell Line embryonic stem cell
9 chr17:43519600-43564600 Weak transcription HSMMtube muscle
10 chr17:43523000-43567200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
11 chr17:43523800-43546400 Weak transcription Pancreas Pancrea
12 chr17:43523800-43560000 Weak transcription NHDF-Ad bronchial
13 chr17:43524400-43567000 Weak transcription Primary T killer memory cells from peripheral blood blood
14 chr17:43527600-43556800 Weak transcription Fetal Lung lung
15 chr17:43527800-43546000 Weak transcription Skeletal Muscle Female skeletal muscle
16 chr17:43529000-43560000 Weak transcription Primary hematopoietic stem cells blood
17 chr17:43529000-43566600 Weak transcription Colon Smooth Muscle Colon
18 chr17:43531400-43550000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
19 chr17:43531600-43551800 Weak transcription Placenta Amnion Placenta Amnion
20 chr17:43531600-43552400 Weak transcription Aorta Aorta
21 chr17:43532000-43549800 Weak transcription Primary T helper cells PMA-I stimulated --
22 chr17:43532000-43552400 Weak transcription Right Ventricle heart
23 chr17:43533800-43553800 Weak transcription Fetal Brain Female brain
24 chr17:43534000-43552200 Weak transcription Brain Hippocampus Middle brain
25 chr17:43534000-43554200 Weak transcription Brain Germinal Matrix brain
26 chr17:43534000-43559000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
27 chr17:43534200-43549600 Weak transcription Brain Inferior Temporal Lobe brain
28 chr17:43534200-43549800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
29 chr17:43534200-43552400 Weak transcription Brain Angular Gyrus brain
30 chr17:43534400-43552200 Weak transcription Fetal Muscle Leg muscle
31 chr17:43537800-43547200 Strong transcription Primary neutrophils fromperipheralblood blood
32 chr17:43539600-43549600 Weak transcription HepG2 liver
33 chr17:43539600-43551800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr17:43539600-43555000 Weak transcription NHLF lung
35 chr17:43539800-43552200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr17:43539800-43564800 Weak transcription HSMM muscle
37 chr17:43540000-43549800 Weak transcription iPS-18 Cell Line embryonic stem cell
38 chr17:43540000-43550000 Weak transcription Muscle Satellite Cultured Cells --
39 chr17:43540000-43555000 Weak transcription A549 lung
40 chr17:43540200-43546000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
41 chr17:43540200-43546000 Weak transcription Stomach Mucosa stomach
42 chr17:43540200-43546800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr17:43540200-43552400 Weak transcription Rectal Mucosa Donor 31 rectum
44 chr17:43540200-43552400 Weak transcription Osteobl bone
45 chr17:43540200-43566600 Weak transcription Primary T killer naive cells fromperipheralblood blood
46 chr17:43540200-43567200 Weak transcription ES-I3 Cell Line embryonic stem cell
47 chr17:43540200-43567200 Weak transcription GM12878-XiMat blood
48 chr17:43540800-43549600 Weak transcription HUVEC blood vessel
49 chr17:43540800-43552400 Weak transcription Colonic Mucosa Colon
50 chr17:43540800-43556000 Strong transcription Monocytes-CD14+_RO01746 blood

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Last update: Aug 31, 2015