The 2.0 version of rSNPBase

Variant report

Variant rs3972613
Chromosome Location chr17:43566931-43566932
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:100 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43510800-43567200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr17:43523000-43567200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
3 chr17:43524400-43567000 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr17:43540200-43567200 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr17:43540200-43567200 Weak transcription GM12878-XiMat blood
6 chr17:43546800-43567200 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr17:43548200-43567600 Weak transcription Small Intestine intestine
8 chr17:43548400-43567400 Weak transcription Psoas Muscle Psoas
9 chr17:43553000-43567200 Weak transcription Rectal Smooth Muscle rectum
10 chr17:43553800-43567200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
11 chr17:43555200-43567200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
12 chr17:43555400-43567000 Weak transcription Gastric stomach
13 chr17:43555600-43567000 Weak transcription HepG2 liver
14 chr17:43555600-43567200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
15 chr17:43555600-43567200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr17:43555600-43567200 Weak transcription Fetal Muscle Leg muscle
17 chr17:43555600-43567200 Weak transcription Fetal Stomach stomach
18 chr17:43555600-43567200 Weak transcription Pancreas Pancrea
19 chr17:43555600-43567200 Weak transcription Stomach Smooth Muscle stomach
20 chr17:43555600-43567200 Weak transcription Thymus Thymus
21 chr17:43555600-43567400 Weak transcription H9 Cell Line embryonic stem cell
22 chr17:43555800-43567200 Weak transcription Fetal Thymus thymus
23 chr17:43556000-43567200 Weak transcription Primary T cells from cord blood blood
24 chr17:43556000-43567200 Weak transcription Placenta Placenta
25 chr17:43556000-43567200 Weak transcription Right Ventricle heart
26 chr17:43556200-43567200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr17:43556800-43567400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
28 chr17:43560400-43567400 Weak transcription Fetal Muscle Trunk muscle
29 chr17:43560800-43567200 Weak transcription Colonic Mucosa Colon
30 chr17:43560800-43567200 Weak transcription Duodenum Mucosa Duodenum
31 chr17:43561000-43567600 Weak transcription Sigmoid Colon Sigmoid Colon
32 chr17:43561400-43567400 Weak transcription Left Ventricle heart
33 chr17:43562000-43567200 Weak transcription Primary T helper naive cells fromperipheralblood blood
34 chr17:43562000-43567200 Weak transcription Primary T helper cells PMA-I stimulated --
35 chr17:43562000-43567200 Weak transcription Primary T helper cells fromperipheralblood blood
36 chr17:43563200-43567200 Weak transcription Fetal Intestine Large intestine
37 chr17:43563800-43567000 Enhancers Primary monocytes fromperipheralblood blood
38 chr17:43564000-43567200 Enhancers Adipose Nuclei Adipose
39 chr17:43564200-43567400 Enhancers Brain Substantia Nigra brain
40 chr17:43564400-43567000 Weak transcription Lung lung
41 chr17:43564600-43567000 Enhancers Muscle Satellite Cultured Cells --
42 chr17:43564600-43567200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr17:43564600-43567200 Enhancers Skeletal Muscle Female skeletal muscle
44 chr17:43564600-43567200 Enhancers HUVEC blood vessel
45 chr17:43564600-43567400 Enhancers Primary B cells from cord blood blood
46 chr17:43565000-43567000 Enhancers Brain Anterior Caudate brain
47 chr17:43565000-43567200 Enhancers Breast Myoepithelial Primary Cells Breast
48 chr17:43565000-43567200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr17:43565000-43567200 Enhancers Cortex derived primary cultured neurospheres brain
50 chr17:43565000-43567200 Enhancers Brain Hippocampus Middle brain

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Last update: Aug 31, 2015