The 2.0 version of rSNPBase

Variant report

Variant rs62065380
Chromosome Location chr17:43527025-43527026
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43510200-43548200 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr17:43510400-43539200 Weak transcription Osteobl bone
3 chr17:43510800-43530000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr17:43510800-43567200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr17:43513800-43528200 Weak transcription Fetal Brain Male brain
6 chr17:43515400-43531200 Weak transcription Small Intestine intestine
7 chr17:43515600-43539200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr17:43515600-43549600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr17:43516800-43530400 Weak transcription Brain Germinal Matrix brain
10 chr17:43516800-43531200 Weak transcription Ovary ovary
11 chr17:43516800-43531800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr17:43517000-43531000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
13 chr17:43517000-43549800 Weak transcription Left Ventricle heart
14 chr17:43518000-43527200 Weak transcription Right Ventricle heart
15 chr17:43518000-43531800 Strong transcription Fetal Intestine Small intestine
16 chr17:43518000-43534000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr17:43518000-43552600 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr17:43518200-43527200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
19 chr17:43518200-43539000 Weak transcription A549 lung
20 chr17:43518200-43548600 Weak transcription Fetal Kidney kidney
21 chr17:43518200-43552200 Weak transcription Rectal Smooth Muscle rectum
22 chr17:43518400-43527200 Weak transcription Aorta Aorta
23 chr17:43518400-43527200 Weak transcription Colon Smooth Muscle Colon
24 chr17:43518400-43530000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
25 chr17:43518400-43530200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
26 chr17:43518400-43531800 Weak transcription H1 Cell Line embryonic stem cell
27 chr17:43518400-43538600 Weak transcription Hela-S3 cervix
28 chr17:43518400-43538800 Weak transcription ES-I3 Cell Line embryonic stem cell
29 chr17:43518400-43549600 Weak transcription HUES6 Cell Line embryonic stem cell
30 chr17:43519000-43530400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
31 chr17:43519400-43533000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr17:43519600-43564600 Weak transcription HSMMtube muscle
33 chr17:43521800-43527600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr17:43522800-43527400 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr17:43523000-43527200 Weak transcription Esophagus oesophagus
36 chr17:43523000-43530800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr17:43523000-43531000 Weak transcription Primary T helper naive cells fromperipheralblood blood
38 chr17:43523000-43533000 Weak transcription Duodenum Mucosa Duodenum
39 chr17:43523000-43567200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr17:43523400-43527200 Weak transcription NHLF lung
41 chr17:43523800-43527200 Weak transcription Primary hematopoietic stem cells blood
42 chr17:43523800-43528400 Weak transcription Primary T killer naive cells fromperipheralblood blood
43 chr17:43523800-43533800 Weak transcription Brain Angular Gyrus brain
44 chr17:43523800-43546400 Weak transcription Pancreas Pancrea
45 chr17:43523800-43560000 Weak transcription NHDF-Ad bronchial
46 chr17:43524000-43527200 Weak transcription Fetal Thymus thymus
47 chr17:43524000-43528600 Weak transcription GM12878-XiMat blood
48 chr17:43524000-43529600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
49 chr17:43524000-43530200 Weak transcription Primary T helper cells PMA-I stimulated --
50 chr17:43524000-43539200 Weak transcription NH-A brain

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Last update: Aug 31, 2015