The 2.0 version of rSNPBase

Variant report

Variant rs12940792
Chromosome Location chr17:43492357-43492358
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43482400-43501600 Weak transcription HMEC breast
2 chr17:43483200-43496000 Weak transcription Hela-S3 cervix
3 chr17:43484200-43492400 Weak transcription iPS-15b Cell Line embryonic stem cell
4 chr17:43484400-43502600 Weak transcription Fetal Lung lung
5 chr17:43484600-43502200 Weak transcription Breast Myoepithelial Primary Cells Breast
6 chr17:43487000-43493000 Weak transcription K562 blood
7 chr17:43487400-43496000 Weak transcription NHEK skin
8 chr17:43487400-43501400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr17:43487600-43493400 Enhancers Stomach Mucosa stomach
10 chr17:43487600-43496400 Weak transcription Brain Cingulate Gyrus brain
11 chr17:43487800-43494200 Genic enhancers Fetal Intestine Small intestine
12 chr17:43488400-43493000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr17:43488400-43493000 Enhancers Primary B cells from peripheral blood blood
14 chr17:43488600-43493000 Enhancers Primary B cells from cord blood blood
15 chr17:43488600-43493200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
16 chr17:43488600-43496000 Weak transcription H1 Cell Line embryonic stem cell
17 chr17:43488600-43501400 Weak transcription HUES6 Cell Line embryonic stem cell
18 chr17:43488800-43505400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
19 chr17:43489000-43496000 Weak transcription Fetal Stomach stomach
20 chr17:43489200-43492800 Weak transcription Brain Anterior Caudate brain
21 chr17:43489600-43492600 Weak transcription Placenta Amnion Placenta Amnion
22 chr17:43489600-43505400 Weak transcription Brain Hippocampus Middle brain
23 chr17:43489800-43492800 Weak transcription ES-I3 Cell Line embryonic stem cell
24 chr17:43489800-43493400 Genic enhancers Primary hematopoietic stem cells short term culture blood
25 chr17:43489800-43494200 Enhancers Primary monocytes fromperipheralblood blood
26 chr17:43490000-43492400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr17:43490000-43492400 Enhancers Rectal Mucosa Donor 29 rectum
28 chr17:43490000-43492400 Enhancers Rectal Mucosa Donor 31 rectum
29 chr17:43490000-43492600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
30 chr17:43490000-43492800 Weak transcription A549 lung
31 chr17:43490000-43494000 Weak transcription Colon Smooth Muscle Colon
32 chr17:43490000-43496000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr17:43490000-43501400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr17:43490200-43492400 Weak transcription Gastric stomach
35 chr17:43490200-43492600 Weak transcription Esophagus oesophagus
36 chr17:43490200-43492600 Enhancers Fetal Intestine Large intestine
37 chr17:43490200-43492600 Weak transcription Fetal Muscle Trunk muscle
38 chr17:43490200-43492600 Weak transcription Lung lung
39 chr17:43490200-43492600 Weak transcription Spleen Spleen
40 chr17:43490200-43492800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr17:43490200-43492800 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr17:43490200-43492800 Weak transcription Right Atrium heart
43 chr17:43490200-43503000 Weak transcription Adipose Nuclei Adipose
44 chr17:43490200-43505600 Weak transcription Thymus Thymus
45 chr17:43490600-43493200 Enhancers Sigmoid Colon Sigmoid Colon
46 chr17:43490600-43501800 Weak transcription Small Intestine intestine
47 chr17:43490800-43492600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
48 chr17:43490800-43492600 Weak transcription Fetal Thymus thymus
49 chr17:43490800-43492800 Genic enhancers Primary neutrophils fromperipheralblood blood
50 chr17:43490800-43492800 Weak transcription Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015