The 2.0 version of rSNPBase

Variant report

Variant rs71238846
Chromosome Location chr17:43552537-43552538
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43510800-43567200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr17:43518000-43552600 Weak transcription Cortex derived primary cultured neurospheres brain
3 chr17:43519600-43564600 Weak transcription HSMMtube muscle
4 chr17:43523000-43567200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr17:43523800-43560000 Weak transcription NHDF-Ad bronchial
6 chr17:43524400-43567000 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr17:43527600-43556800 Weak transcription Fetal Lung lung
8 chr17:43529000-43560000 Weak transcription Primary hematopoietic stem cells blood
9 chr17:43529000-43566600 Weak transcription Colon Smooth Muscle Colon
10 chr17:43533800-43553800 Weak transcription Fetal Brain Female brain
11 chr17:43534000-43554200 Weak transcription Brain Germinal Matrix brain
12 chr17:43534000-43559000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr17:43539600-43555000 Weak transcription NHLF lung
14 chr17:43539800-43564800 Weak transcription HSMM muscle
15 chr17:43540000-43555000 Weak transcription A549 lung
16 chr17:43540200-43566600 Weak transcription Primary T killer naive cells fromperipheralblood blood
17 chr17:43540200-43567200 Weak transcription ES-I3 Cell Line embryonic stem cell
18 chr17:43540200-43567200 Weak transcription GM12878-XiMat blood
19 chr17:43540800-43556000 Strong transcription Monocytes-CD14+_RO01746 blood
20 chr17:43543600-43555000 Weak transcription H9 Cell Line embryonic stem cell
21 chr17:43546600-43559200 Weak transcription Ovary ovary
22 chr17:43546600-43565000 Weak transcription Brain Cingulate Gyrus brain
23 chr17:43546800-43560000 Weak transcription Stomach Mucosa stomach
24 chr17:43546800-43567200 Weak transcription Primary T helper naive cells from peripheral blood blood
25 chr17:43547200-43560200 Weak transcription HMEC breast
26 chr17:43547400-43552600 Weak transcription Primary T regulatory cells fromperipheralblood blood
27 chr17:43547400-43555200 Weak transcription NHEK skin
28 chr17:43547400-43560600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr17:43548200-43561800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
30 chr17:43548200-43567600 Weak transcription Small Intestine intestine
31 chr17:43548400-43566600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
32 chr17:43548400-43567400 Weak transcription Psoas Muscle Psoas
33 chr17:43549400-43556400 Strong transcription Primary neutrophils fromperipheralblood blood
34 chr17:43549600-43555600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr17:43549600-43555600 Strong transcription Fetal Stomach stomach
36 chr17:43549600-43555600 Strong transcription Stomach Smooth Muscle stomach
37 chr17:43549600-43556200 Strong transcription Primary monocytes fromperipheralblood blood
38 chr17:43549600-43556200 Strong transcription Liver Liver
39 chr17:43549800-43555600 Strong transcription Fetal Intestine Small intestine
40 chr17:43549800-43555800 Strong transcription Primary T helper cells PMA-I stimulated --
41 chr17:43550000-43557400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr17:43550200-43560000 Weak transcription HUES6 Cell Line embryonic stem cell
43 chr17:43550200-43564600 Weak transcription Primary B cells from cord blood blood
44 chr17:43550400-43552800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
45 chr17:43550400-43554800 Weak transcription HepG2 liver
46 chr17:43550400-43560400 Weak transcription HUVEC blood vessel
47 chr17:43550400-43565000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
48 chr17:43550600-43552600 Weak transcription Primary T helper cells fromperipheralblood blood
49 chr17:43551000-43553000 Strong transcription Fetal Intestine Large intestine
50 chr17:43551200-43553800 Weak transcription Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015